Variant report
Variant | rs71588037 |
---|---|
Chromosome Location | chr5:151532339-151532340 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11167571 | 0.96[ASN][1000 genomes] |
rs12188765 | 0.96[ASN][1000 genomes] |
rs12657451 | 0.93[ASN][1000 genomes] |
rs13188666 | 0.96[ASN][1000 genomes] |
rs154688 | 0.96[ASN][1000 genomes] |
rs154689 | 0.96[ASN][1000 genomes] |
rs17804712 | 0.96[ASN][1000 genomes] |
rs294948 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs294950 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs294952 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs294956 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs294960 | 0.89[ASN][1000 genomes] |
rs3911204 | 0.93[ASN][1000 genomes] |
rs4403170 | 0.96[ASN][1000 genomes] |
rs59349033 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6579919 | 0.96[ASN][1000 genomes] |
rs68004240 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs71588038 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2760935 | chr5:151463117-151586051 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv883039 | chr5:151471642-151540888 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | nsv883040 | chr5:151471642-151596273 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv883045 | chr5:151514171-151540888 | Enhancers Bivalent Enhancer Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv883046 | chr5:151514956-151540888 | Bivalent Enhancer Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv516251 | chr5:151514956-151543128 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv883047 | chr5:151516086-151540888 | Weak transcription Enhancers Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv1023828 | chr5:151522149-151956217 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:151532000-151532800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |