Variant report

Variant	rs2951531
Chromosome Location	chr12:62474357-62474358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1146079	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs191551	0.84[JPT][hapmap]
rs348635	0.84[JPT][hapmap]
rs348636	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs348638	0.90[JPT][hapmap]
rs348639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348652	0.92[JPT][hapmap]
rs348654	0.92[JPT][hapmap]
rs348655	0.90[JPT][hapmap]
rs348662	0.84[JPT][hapmap]
rs348663	0.84[JPT][hapmap]
rs348664	0.90[JPT][hapmap]
rs348672	0.90[CEU][hapmap];0.90[CHB][hapmap]
rs348675	0.90[CEU][hapmap];0.80[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs348676	0.90[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs348686	0.90[JPT][hapmap]
rs348687	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs348692	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links