Variant report
| Variant | rs348664 |
|---|---|
| Chromosome Location | chr12:62454732-62454733 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs191551 | 0.90[JPT][hapmap] |
| rs2951468 | 0.95[CEU][hapmap] |
| rs2951531 | 0.90[JPT][hapmap] |
| rs348635 | 0.90[JPT][hapmap] |
| rs348636 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs348639 | 0.89[JPT][hapmap] |
| rs348652 | 0.81[JPT][hapmap] |
| rs348654 | 0.81[JPT][hapmap] |
| rs348655 | 0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs348660 | 0.89[JPT][hapmap] |
| rs348661 | 0.88[JPT][hapmap] |
| rs348662 | 0.90[JPT][hapmap] |
| rs348663 | 0.90[JPT][hapmap] |
| rs348672 | 0.81[JPT][hapmap] |
| rs348686 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs348687 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs348692 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs348695 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs348696 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs980891 | 0.80[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv832435 | chr12:62407000-62601835 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv975607 | chr12:62450308-62459569 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62448000-62458800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
