Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1146079	0.81[JPT][hapmap]
rs191551	0.90[JPT][hapmap]
rs2951468	0.84[CEU][hapmap]
rs2951531	0.90[JPT][hapmap]
rs348635	0.90[JPT][hapmap]
rs348636	1.00[ASW][hapmap];0.90[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs348638	0.81[JPT][hapmap]
rs348639	0.90[JPT][hapmap]
rs348652	0.81[JPT][hapmap]
rs348654	0.81[JPT][hapmap]
rs348660	0.90[JPT][hapmap];0.91[MEX][hapmap]
rs348661	0.89[JPT][hapmap];0.86[MEX][hapmap]
rs348662	0.90[JPT][hapmap]
rs348663	0.90[JPT][hapmap]
rs348664	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs348672	0.81[JPT][hapmap]
rs348676	0.81[JPT][hapmap]
rs348679	0.81[JPT][hapmap]
rs348686	0.92[ASW][hapmap];0.90[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348687	0.90[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348692	0.94[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348695	0.84[AMR][1000 genomes]
rs348696	0.82[GIH][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv975607	chr12:62450308-62459569	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62448000-62458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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