Variant report

Variant	rs295290
Chromosome Location	chr9:86447605-86447606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86236750..86239117-chr9:86447566..86449894,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148057	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10118300	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10125556	0.83[EUR][1000 genomes]
rs10453251	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10780628	0.81[EUR][1000 genomes]
rs10780629	0.81[EUR][1000 genomes]
rs10780630	0.80[EUR][1000 genomes]
rs10780632	0.82[EUR][1000 genomes]
rs10780633	0.82[EUR][1000 genomes]
rs10868046	0.81[EUR][1000 genomes]
rs10868047	0.81[EUR][1000 genomes]
rs10868048	0.81[EUR][1000 genomes]
rs10868052	0.82[EUR][1000 genomes]
rs10868053	0.82[EUR][1000 genomes]
rs10868054	0.82[EUR][1000 genomes]
rs10868057	0.83[EUR][1000 genomes]
rs10868061	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10868062	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10868063	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10868064	0.84[AMR][1000 genomes]
rs11140236	0.82[EUR][1000 genomes]
rs11140237	0.81[EUR][1000 genomes]
rs11140239	0.81[EUR][1000 genomes]
rs11140242	0.83[EUR][1000 genomes]
rs11140243	0.83[EUR][1000 genomes]
rs11140249	0.81[AMR][1000 genomes]
rs12057022	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12339076	0.84[EUR][1000 genomes]
rs12344567	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17330622	0.82[EUR][1000 genomes]
rs2098494	0.81[EUR][1000 genomes]
rs2111683	0.84[EUR][1000 genomes]
rs2160821	0.84[EUR][1000 genomes]
rs2287373	0.82[EUR][1000 genomes]
rs2378660	0.83[EUR][1000 genomes]
rs28584828	0.88[AMR][1000 genomes]
rs295269	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs295271	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs295272	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs295276	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs295280	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs295281	0.83[EUR][1000 genomes]
rs295282	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs295283	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs295284	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs295285	0.81[AMR][1000 genomes]
rs295286	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs295287	0.81[AMR][1000 genomes]
rs295292	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs295293	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3763622	0.83[EUR][1000 genomes]
rs3763623	0.81[EUR][1000 genomes]
rs4242624	0.84[EUR][1000 genomes]
rs4576496	0.83[EUR][1000 genomes]
rs4750	0.82[EUR][1000 genomes]
rs4877264	0.81[EUR][1000 genomes]
rs4877266	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4877802	0.81[EUR][1000 genomes]
rs4877804	0.82[EUR][1000 genomes]
rs4877809	0.84[EUR][1000 genomes]
rs4877810	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4877811	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55881223	0.81[EUR][1000 genomes]
rs7021357	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7023396	0.84[EUR][1000 genomes]
rs7031676	0.81[EUR][1000 genomes]
rs7042776	0.84[EUR][1000 genomes]
rs7044691	0.82[EUR][1000 genomes]
rs7048546	0.82[EUR][1000 genomes]
rs7848686	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7849343	0.84[EUR][1000 genomes]
rs7859179	0.83[EUR][1000 genomes]
rs7864189	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7868930	0.80[EUR][1000 genomes]
rs7874436	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7874454	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs918223	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9410590	0.80[AMR][1000 genomes]
rs9410885	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2761538	chr9:86401015-86451943	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
6	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv6590	chr9:86435603-86480442	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv8539	chr9:86446577-86449422	Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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