Variant report

Variant	rs2955755
Chromosome Location	chr15:76402238-76402239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10152136	1.00[AMR][1000 genomes]
rs10152476	1.00[AMR][1000 genomes]
rs10152926	1.00[AMR][1000 genomes]
rs1910511	1.00[AMR][1000 genomes]
rs334932	1.00[AMR][1000 genomes]
rs56670053	1.00[AMR][1000 genomes]
rs57509763	1.00[AMR][1000 genomes]
rs58897892	1.00[AMR][1000 genomes]
rs60378247	1.00[AMR][1000 genomes]
rs60841857	1.00[AMR][1000 genomes]
rs60973512	1.00[AMR][1000 genomes]
rs61710441	1.00[AMR][1000 genomes]
rs8024490	1.00[AMR][1000 genomes]
rs8027221	1.00[AMR][1000 genomes]
rs8029590	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76393600-76405200	Weak transcription	Right Atrium	heart
2	chr15:76401000-76403800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:76401000-76404800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:76401000-76407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:76401600-76408000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:76402000-76407800	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links