Variant report

Variant	rs58897892
Chromosome Location	chr15:76286582-76286583
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10152136	1.00[AMR][1000 genomes]
rs10152476	1.00[AMR][1000 genomes]
rs10152926	1.00[AMR][1000 genomes]
rs12324675	1.00[AMR][1000 genomes]
rs13313432	1.00[AFR][1000 genomes]
rs1910511	1.00[AMR][1000 genomes]
rs2675219	1.00[AMR][1000 genomes]
rs28431332	1.00[AMR][1000 genomes]
rs28517446	1.00[AMR][1000 genomes]
rs2955755	1.00[AMR][1000 genomes]
rs334932	1.00[AMR][1000 genomes]
rs56670053	1.00[AMR][1000 genomes]
rs57021331	1.00[AMR][1000 genomes]
rs57509763	1.00[AMR][1000 genomes]
rs60378247	1.00[AMR][1000 genomes]
rs60841857	1.00[AMR][1000 genomes]
rs60882949	1.00[AMR][1000 genomes]
rs60973512	1.00[AMR][1000 genomes]
rs61710441	1.00[AMR][1000 genomes]
rs8024490	1.00[AMR][1000 genomes]
rs8027221	1.00[AMR][1000 genomes]
rs8029590	1.00[AMR][1000 genomes]
rs8040692	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1042140	chr15:76243040-76298555	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv542437	chr15:76243040-76298555	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76274000-76290000	Weak transcription	Pancreas	Pancrea
2	chr15:76276600-76295000	Weak transcription	Hela-S3	cervix
3	chr15:76282800-76286600	Weak transcription	Placenta	Placenta
4	chr15:76286400-76287000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:76286400-76288000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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