Variant report

Variant	rs60882949
Chromosome Location	chr15:76168338-76168339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76167386..76170253-chr15:76181012..76182661,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10152136	1.00[AMR][1000 genomes]
rs10152476	1.00[AMR][1000 genomes]
rs10152926	1.00[AMR][1000 genomes]
rs12324675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1910511	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675219	1.00[AMR][1000 genomes]
rs28431332	1.00[AMR][1000 genomes]
rs28517446	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs334932	1.00[AMR][1000 genomes]
rs56670053	1.00[AMR][1000 genomes]
rs57021331	1.00[AMR][1000 genomes]
rs57509763	1.00[AMR][1000 genomes]
rs58897892	1.00[AMR][1000 genomes]
rs60378247	1.00[AMR][1000 genomes]
rs60841857	1.00[AMR][1000 genomes]
rs60973512	1.00[AMR][1000 genomes]
rs61710441	1.00[AMR][1000 genomes]
rs8024490	1.00[AMR][1000 genomes]
rs8027221	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8029590	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040692	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv984093	chr15:76164797-76168564	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
2	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
3	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
4	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:76138400-76184000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:76138800-76169200	Weak transcription	Psoas Muscle	Psoas
8	chr15:76140000-76184000	Weak transcription	Fetal Kidney	kidney
9	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
12	chr15:76152800-76193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:76153400-76168800	Weak transcription	Brain Substantia Nigra	brain
14	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:76160800-76176000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:76161000-76182200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:76161200-76172600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:76161800-76182000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:76162000-76176600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr15:76162000-76184000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:76164200-76177200	Strong transcription	Dnd41	blood
22	chr15:76164200-76182400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:76164400-76176800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:76164800-76176000	Weak transcription	Fetal Heart	heart
25	chr15:76165000-76178400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:76165400-76188800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:76165600-76168600	Strong transcription	Stomach Smooth Muscle	stomach
28	chr15:76165600-76168800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:76165600-76172000	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:76165600-76172600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:76165600-76175800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:76165600-76185800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:76165600-76194800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr15:76165800-76168800	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr15:76165800-76168800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:76165800-76168800	Strong transcription	Fetal Brain Female	brain
37	chr15:76165800-76168800	Strong transcription	HSMM	muscle
38	chr15:76165800-76168800	Strong transcription	Osteobl	bone
39	chr15:76165800-76169000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr15:76165800-76169000	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:76165800-76169200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:76165800-76169400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:76165800-76172400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr15:76165800-76172600	Strong transcription	Fetal Thymus	thymus
45	chr15:76165800-76186600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:76166000-76168600	Strong transcription	Primary T cells from cord blood	blood
47	chr15:76166000-76168600	Strong transcription	Fetal Intestine Large	intestine
48	chr15:76166000-76168600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr15:76166000-76169000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:76166000-76169400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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