Variant report

Variant	rs57509763
Chromosome Location	chr15:76232082-76232083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76225604..76228102-chr15:76229975..76232639,2	MCF-7	breast:
2	chr15:76231213..76235489-chr15:76235646..76238510,7	K562	blood:
3	chr15:76230088..76234622-chr15:76234992..76238934,7	K562	blood:
4	chr15:76230095..76231887-chr15:76232023..76234158,2	K562	blood:

Variant related genes	Relation type
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10152136	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10152476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10152926	1.00[AMR][1000 genomes]
rs12324675	1.00[AMR][1000 genomes]
rs1910511	1.00[AMR][1000 genomes]
rs2675219	1.00[AMR][1000 genomes]
rs28431332	1.00[AMR][1000 genomes]
rs28517446	1.00[AMR][1000 genomes]
rs2955755	1.00[AMR][1000 genomes]
rs334932	1.00[AMR][1000 genomes]
rs56670053	1.00[AMR][1000 genomes]
rs57021331	1.00[AMR][1000 genomes]
rs58897892	1.00[AMR][1000 genomes]
rs60378247	1.00[AMR][1000 genomes]
rs60841857	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60882949	1.00[AMR][1000 genomes]
rs60973512	1.00[AMR][1000 genomes]
rs61710441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024490	1.00[AMR][1000 genomes]
rs8027221	1.00[AMR][1000 genomes]
rs8029590	1.00[AMR][1000 genomes]
rs8040692	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:76217200-76252000	Weak transcription	Pancreas	Pancrea
5	chr15:76217600-76232600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr15:76219000-76232200	Weak transcription	Psoas Muscle	Psoas
7	chr15:76221200-76232200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:76222000-76232200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:76222800-76233200	Strong transcription	NH-A	brain
10	chr15:76223600-76236200	Weak transcription	Fetal Heart	heart
11	chr15:76224800-76233000	Weak transcription	Fetal Intestine Small	intestine
12	chr15:76224800-76233400	Strong transcription	A549	lung
13	chr15:76225200-76232600	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:76226400-76236600	Weak transcription	Stomach Mucosa	stomach
15	chr15:76226600-76238600	Weak transcription	NHLF	lung
16	chr15:76226800-76232200	Weak transcription	Primary T cells from cord blood	blood
17	chr15:76226800-76232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:76226800-76232800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:76226800-76233600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:76226800-76234600	Weak transcription	Adipose Nuclei	Adipose
21	chr15:76226800-76235000	Weak transcription	Fetal Kidney	kidney
22	chr15:76227000-76232600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr15:76227000-76233400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:76227000-76234000	Weak transcription	HepG2	liver
25	chr15:76227800-76233000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr15:76227800-76236000	Weak transcription	Osteobl	bone
27	chr15:76228000-76232200	Weak transcription	NHDF-Ad	bronchial
28	chr15:76228000-76232400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:76228000-76232400	Weak transcription	K562	blood
30	chr15:76228000-76233000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:76228000-76233200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:76228000-76234600	Weak transcription	Primary B cells from cord blood	blood
33	chr15:76228000-76235600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:76228000-76235600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:76228200-76232200	Weak transcription	Fetal Lung	lung
36	chr15:76228200-76232200	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:76228200-76233800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:76228200-76234000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:76228200-76239600	Weak transcription	Fetal Brain Female	brain
40	chr15:76228400-76236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:76228600-76232400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:76228800-76232400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:76229400-76232600	Strong transcription	HMEC	breast
44	chr15:76229600-76232200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
45	chr15:76229800-76232600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:76230000-76232200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr15:76230000-76232400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr15:76230000-76232400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:76230000-76232800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr15:76230000-76233600	Strong transcription	HSMM	muscle

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