Variant report

Variant	rs28517446
Chromosome Location	chr15:76152963-76152964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76134343..76136099-chr15:76152538..76154299,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10152136	1.00[AMR][1000 genomes]
rs10152476	1.00[AMR][1000 genomes]
rs10152926	1.00[AMR][1000 genomes]
rs12324675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1910511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675219	1.00[AMR][1000 genomes]
rs28431332	1.00[AMR][1000 genomes]
rs334932	1.00[AMR][1000 genomes]
rs56670053	1.00[AMR][1000 genomes]
rs57021331	1.00[AMR][1000 genomes]
rs57509763	1.00[AMR][1000 genomes]
rs58897892	1.00[AMR][1000 genomes]
rs60378247	1.00[AMR][1000 genomes]
rs60841857	1.00[AMR][1000 genomes]
rs60882949	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60973512	1.00[AMR][1000 genomes]
rs61710441	1.00[AMR][1000 genomes]
rs8024490	1.00[AMR][1000 genomes]
rs8027221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8029590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040692	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv974601	chr15:76139204-76160467	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137200-76166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:76137600-76155400	Weak transcription	Stomach Mucosa	stomach
3	chr15:76137600-76165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:76137800-76165800	Weak transcription	Liver	Liver
5	chr15:76137800-76166000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
7	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
8	chr15:76138200-76153600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:76138200-76154000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:76138200-76154200	Weak transcription	Gastric	stomach
11	chr15:76138200-76154200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:76138200-76154200	Weak transcription	Right Atrium	heart
13	chr15:76138200-76161800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:76138200-76166000	Weak transcription	Aorta	Aorta
15	chr15:76138200-76166000	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:76138200-76166000	Weak transcription	Pancreas	Pancrea
17	chr15:76138200-76166000	Weak transcription	Spleen	Spleen
18	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
19	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:76138400-76153000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:76138400-76153000	Weak transcription	Thymus	Thymus
23	chr15:76138400-76155000	Weak transcription	NH-A	brain
24	chr15:76138400-76184000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:76138800-76166000	Weak transcription	Esophagus	oesophagus
26	chr15:76138800-76169200	Weak transcription	Psoas Muscle	Psoas
27	chr15:76139400-76153200	Weak transcription	Placenta	Placenta
28	chr15:76140000-76156600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:76140000-76161800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr15:76140000-76165800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:76140000-76184000	Weak transcription	Fetal Kidney	kidney
32	chr15:76140400-76166000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:76140600-76153000	Weak transcription	Fetal Brain Female	brain
34	chr15:76140600-76165600	Weak transcription	Fetal Brain Male	brain
35	chr15:76141200-76154400	Weak transcription	Fetal Lung	lung
36	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:76141600-76154200	Weak transcription	Fetal Heart	heart
38	chr15:76141600-76161800	Weak transcription	Brain Germinal Matrix	brain
39	chr15:76141600-76166000	Weak transcription	NHLF	lung
40	chr15:76142000-76154000	Weak transcription	HSMMtube	muscle
41	chr15:76142000-76161800	Weak transcription	Ovary	ovary
42	chr15:76142800-76153000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:76144600-76153000	Weak transcription	Left Ventricle	heart
44	chr15:76144800-76165800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:76145600-76161600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:76146000-76157800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:76146200-76166000	Weak transcription	Right Ventricle	heart
49	chr15:76146400-76153200	Weak transcription	A549	lung
50	chr15:76146400-76161800	Weak transcription	HMEC	breast

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