Variant report

Variant	rs2955942
Chromosome Location	chr11:34214135-34214136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34213210..34216201-chr11:34233621..34235955,2	MCF-7	breast:
2	chr11:34213263..34215421-chr11:34226827..34229428,2	MCF-7	breast:
3	chr11:34213006..34215990-chr11:34223234..34225246,2	K562	blood:

rs_ID	r²[population]
rs2467382	1.00[AMR][1000 genomes]
rs2955938	1.00[AMR][1000 genomes]
rs2957493	1.00[AMR][1000 genomes]
rs2957494	0.91[AFR][1000 genomes]
rs2957527	1.00[AMR][1000 genomes]
rs2982602	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2982603	1.00[AMR][1000 genomes]
rs2982605	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34202400-34214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
4	chr11:34206400-34214200	Weak transcription	Ovary	ovary
5	chr11:34207000-34218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:34207200-34226000	Weak transcription	Gastric	stomach
7	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
8	chr11:34208400-34217200	Weak transcription	Left Ventricle	heart
9	chr11:34208600-34214800	Weak transcription	Right Atrium	heart
10	chr11:34210200-34214200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:34210600-34214200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:34210600-34214600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:34210600-34215600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:34210600-34216000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:34210600-34224800	Weak transcription	Primary T cells from cord blood	blood
16	chr11:34210600-34226600	Weak transcription	Pancreas	Pancrea
17	chr11:34210800-34214200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:34210800-34214600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:34211000-34214600	Weak transcription	Fetal Intestine Small	intestine
20	chr11:34211200-34215400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:34211200-34217000	Weak transcription	Liver	Liver
22	chr11:34211400-34214400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:34211400-34214400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:34212000-34216800	Enhancers	Placenta	Placenta
25	chr11:34212600-34214200	Enhancers	Fetal Thymus	thymus
26	chr11:34213000-34214200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:34213000-34214200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:34213000-34215200	Enhancers	Brain Substantia Nigra	brain
29	chr11:34213000-34216000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:34213200-34214200	Enhancers	NHDF-Ad	bronchial
31	chr11:34213200-34214400	Enhancers	NH-A	brain
32	chr11:34213200-34215000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr11:34213200-34215800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:34213200-34215800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr11:34213200-34216000	Enhancers	Brain Cingulate Gyrus	brain
36	chr11:34213200-34216400	Enhancers	Fetal Muscle Leg	muscle
37	chr11:34213400-34214400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:34213400-34214400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:34213400-34214600	Enhancers	Brain Angular Gyrus	brain
40	chr11:34213400-34215000	Enhancers	Brain Anterior Caudate	brain
41	chr11:34213400-34215000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:34213400-34215600	Enhancers	Brain Hippocampus Middle	brain
43	chr11:34213400-34216000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr11:34213400-34216200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr11:34213400-34216200	Enhancers	Fetal Muscle Trunk	muscle
46	chr11:34213600-34214200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr11:34213600-34214200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:34213600-34214200	Enhancers	HMEC	breast
49	chr11:34213600-34214200	Enhancers	NHEK	skin
50	chr11:34213600-34214200	Enhancers	Osteobl	bone

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