Variant report

Variant	rs2957494
Chromosome Location	chr11:34211584-34211585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34209674..34212372-chr11:34378433..34380265,3	MCF-7	breast:
2	chr11:34211397..34213472-chr11:34217305..34219861,2	K562	blood:
3	chr11:34210356..34212606-chr11:34378528..34380428,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2955942	0.91[AFR][1000 genomes]
rs2982602	0.91[AFR][1000 genomes]
rs2982605	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511473	chr11:34202953-34212883	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
2	chr11:34202400-34214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
5	chr11:34204400-34212000	Weak transcription	GM12878-XiMat	blood
6	chr11:34206200-34214000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:34206400-34214200	Weak transcription	Ovary	ovary
8	chr11:34207000-34218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:34207200-34226000	Weak transcription	Gastric	stomach
10	chr11:34208200-34213200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:34208200-34213600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:34208200-34213800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
14	chr11:34208400-34213000	Weak transcription	HSMMtube	muscle
15	chr11:34208400-34213200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:34208400-34213200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:34208400-34213400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:34208400-34213600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:34208400-34213600	Weak transcription	HMEC	breast
20	chr11:34208400-34213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:34208400-34214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:34208400-34217200	Weak transcription	Left Ventricle	heart
23	chr11:34208600-34212000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:34208600-34213200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:34208600-34213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:34208600-34213400	Weak transcription	Brain Anterior Caudate	brain
27	chr11:34208600-34213400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:34208600-34213400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:34208600-34213400	Weak transcription	HSMM	muscle
30	chr11:34208600-34213600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:34208600-34214000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:34208600-34214800	Weak transcription	Right Atrium	heart
33	chr11:34208800-34213400	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:34208800-34213800	Weak transcription	Right Ventricle	heart
35	chr11:34209000-34213400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:34209000-34213600	Weak transcription	Fetal Stomach	stomach
37	chr11:34210200-34214200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:34210400-34213200	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:34210600-34212000	Weak transcription	Placenta	Placenta
40	chr11:34210600-34212600	Weak transcription	Fetal Thymus	thymus
41	chr11:34210600-34213000	Weak transcription	Brain Substantia Nigra	brain
42	chr11:34210600-34213800	Weak transcription	Brain Germinal Matrix	brain
43	chr11:34210600-34214000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:34210600-34214000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:34210600-34214000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:34210600-34214000	Weak transcription	A549	lung
47	chr11:34210600-34214200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:34210600-34214600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:34210600-34215600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:34210600-34216000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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