Variant report

Variant	rs2982602
Chromosome Location	chr11:34214758-34214759
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34214382..34216141-chr11:34216266..34217822,2	MCF-7	breast:
2	chr11:34213210..34216201-chr11:34233621..34235955,2	MCF-7	breast:
3	chr11:34213263..34215421-chr11:34226827..34229428,2	MCF-7	breast:
4	chr11:34213006..34215990-chr11:34223234..34225246,2	K562	blood:
5	chr11:34214181..34215695-chr11:34230468..34232938,2	MCF-7	breast:

rs_ID	r²[population]
rs2467382	1.00[AMR][1000 genomes]
rs2955938	1.00[AMR][1000 genomes]
rs2955942	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957493	1.00[AMR][1000 genomes]
rs2957494	0.91[AFR][1000 genomes]
rs2957527	1.00[AMR][1000 genomes]
rs2982603	1.00[AMR][1000 genomes]
rs2982605	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
3	chr11:34207000-34218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:34207200-34226000	Weak transcription	Gastric	stomach
5	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
6	chr11:34208400-34217200	Weak transcription	Left Ventricle	heart
7	chr11:34208600-34214800	Weak transcription	Right Atrium	heart
8	chr11:34210600-34215600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:34210600-34216000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:34210600-34224800	Weak transcription	Primary T cells from cord blood	blood
11	chr11:34210600-34226600	Weak transcription	Pancreas	Pancrea
12	chr11:34211200-34215400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:34211200-34217000	Weak transcription	Liver	Liver
14	chr11:34212000-34216800	Enhancers	Placenta	Placenta
15	chr11:34213000-34215200	Enhancers	Brain Substantia Nigra	brain
16	chr11:34213000-34216000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:34213200-34215000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr11:34213200-34215800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:34213200-34215800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr11:34213200-34216000	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:34213200-34216400	Enhancers	Fetal Muscle Leg	muscle
22	chr11:34213400-34215000	Enhancers	Brain Anterior Caudate	brain
23	chr11:34213400-34215000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:34213400-34215600	Enhancers	Brain Hippocampus Middle	brain
25	chr11:34213400-34216000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:34213400-34216200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr11:34213400-34216200	Enhancers	Fetal Muscle Trunk	muscle
28	chr11:34213600-34215000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr11:34213600-34215200	Enhancers	Colon Smooth Muscle	Colon
30	chr11:34213600-34215400	Enhancers	Fetal Stomach	stomach
31	chr11:34213600-34216200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:34213600-34216600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:34213800-34215000	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr11:34213800-34215800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:34213800-34216000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:34213800-34216200	Enhancers	Brain Germinal Matrix	brain
37	chr11:34213800-34216200	Enhancers	Right Ventricle	heart
38	chr11:34214000-34215000	Enhancers	Fetal Lung	lung
39	chr11:34214000-34215000	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr11:34214000-34215000	Flanking Active TSS	HSMM	muscle
41	chr11:34214000-34215000	Flanking Active TSS	NHLF	lung
42	chr11:34214000-34215200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:34214000-34215200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:34214000-34215200	Enhancers	Stomach Mucosa	stomach
45	chr11:34214000-34215400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr11:34214000-34215400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:34214000-34215400	Enhancers	Esophagus	oesophagus
48	chr11:34214000-34215800	Enhancers	A549	lung
49	chr11:34214000-34216200	Strong transcription	HepG2	liver
50	chr11:34214000-34216400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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