Variant report

Variant	rs2961741
Chromosome Location	chr5:151919607-151919608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10036750	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045463	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155517	0.80[EUR][1000 genomes]
rs1035398	1.00[JPT][hapmap]
rs10515669	1.00[JPT][hapmap]
rs12188564	0.82[EUR][1000 genomes]
rs17113291	1.00[JPT][hapmap]
rs17451282	1.00[JPT][hapmap]
rs17451303	1.00[JPT][hapmap]
rs17452991	0.82[EUR][1000 genomes]
rs17549307	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17549488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2080930	1.00[JPT][hapmap]
rs2194084	1.00[JPT][hapmap]
rs2961756	0.80[EUR][1000 genomes]
rs2961765	0.80[EUR][1000 genomes]
rs2961766	0.82[EUR][1000 genomes]
rs2964230	0.82[EUR][1000 genomes]
rs2964246	0.91[YRI][hapmap]
rs3923209	0.81[EUR][1000 genomes]
rs4246030	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4342320	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4478308	0.82[EUR][1000 genomes]
rs4580766	0.80[EUR][1000 genomes]
rs4958543	1.00[JPT][hapmap]
rs4958551	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4958554	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4958555	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4958560	0.81[EUR][1000 genomes]
rs4958561	0.82[EUR][1000 genomes]
rs55696164	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56050684	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6876403	0.82[EUR][1000 genomes]
rs6876723	0.81[EUR][1000 genomes]
rs72795336	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72795339	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72795340	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72795344	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72795349	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72795350	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72795351	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72795352	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72795364	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795366	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795376	0.82[EUR][1000 genomes]
rs72795379	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028516	chr5:151896509-151930647	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151918200-151923000	Weak transcription	H9 Cell Line	embryonic stem cell

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