Variant report

Variant	rs55696164
Chromosome Location	chr5:151890623-151890624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10036750	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10045463	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1035398	0.86[ASN][1000 genomes]
rs10515672	0.86[ASN][1000 genomes]
rs12188564	1.00[AFR][1000 genomes]
rs17113291	0.86[ASN][1000 genomes]
rs17451282	0.86[ASN][1000 genomes]
rs17451303	0.86[ASN][1000 genomes]
rs17452991	1.00[AFR][1000 genomes]
rs17453481	1.00[AFR][1000 genomes]
rs17453530	1.00[AFR][1000 genomes]
rs17453740	1.00[AFR][1000 genomes]
rs17453775	1.00[AFR][1000 genomes]
rs17454420	1.00[AFR][1000 genomes]
rs17549307	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17549488	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17550343	1.00[AFR][1000 genomes]
rs2961741	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4246030	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4342320	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4557395	1.00[AFR][1000 genomes]
rs4958323	1.00[AFR][1000 genomes]
rs4958551	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958552	0.93[ASN][1000 genomes]
rs4958554	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958555	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958561	1.00[AFR][1000 genomes]
rs4958562	1.00[AFR][1000 genomes]
rs55648729	1.00[AFR][1000 genomes]
rs55677109	0.86[ASN][1000 genomes]
rs56014830	1.00[AFR][1000 genomes]
rs56050684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165873	0.86[ASN][1000 genomes]
rs72795315	0.86[ASN][1000 genomes]
rs72795319	0.86[ASN][1000 genomes]
rs72795336	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795339	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795340	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795344	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795349	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795350	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795351	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795352	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795364	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72795366	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72795376	0.87[AFR][1000 genomes]
rs72795379	1.00[AFR][1000 genomes]
rs72795389	1.00[AFR][1000 genomes]
rs72797233	1.00[AFR][1000 genomes]
rs72797237	1.00[AFR][1000 genomes]
rs72797243	1.00[AFR][1000 genomes]
rs72797251	1.00[AFR][1000 genomes]
rs72797254	1.00[AFR][1000 genomes]
rs72797262	1.00[AFR][1000 genomes]
rs72797296	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151890400-151892200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:151890400-151892800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:151890600-151891200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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