Variant report

Variant	rs72795351
Chromosome Location	chr5:151910821-151910822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10036750	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10045463	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10053277	0.82[AMR][1000 genomes]
rs12188564	0.87[AFR][1000 genomes]
rs17452090	0.82[AMR][1000 genomes]
rs17452991	0.87[AFR][1000 genomes]
rs17453481	0.87[AFR][1000 genomes]
rs17453530	0.87[AFR][1000 genomes]
rs17453740	0.87[AFR][1000 genomes]
rs17453775	0.87[AFR][1000 genomes]
rs17454420	0.87[AFR][1000 genomes]
rs17549307	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549488	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550343	0.87[AFR][1000 genomes]
rs28663290	0.82[AMR][1000 genomes]
rs28687145	0.81[AMR][1000 genomes]
rs2961741	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4246030	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342320	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407620	0.82[AMR][1000 genomes]
rs4475248	0.82[AMR][1000 genomes]
rs4557395	0.87[AFR][1000 genomes]
rs4958323	0.87[AFR][1000 genomes]
rs4958551	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4958554	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4958555	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4958561	0.87[AFR][1000 genomes]
rs4958562	0.87[AFR][1000 genomes]
rs55648729	0.87[AFR][1000 genomes]
rs55696164	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55748286	0.82[AMR][1000 genomes]
rs55858427	0.82[AMR][1000 genomes]
rs56014830	0.87[AFR][1000 genomes]
rs56050684	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795336	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795339	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795340	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795344	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795349	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795350	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795352	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795354	0.82[AMR][1000 genomes]
rs72795364	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72795366	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72795379	0.87[AFR][1000 genomes]
rs72795389	0.87[AFR][1000 genomes]
rs72797233	0.87[AFR][1000 genomes]
rs72797237	0.87[AFR][1000 genomes]
rs72797243	0.87[AFR][1000 genomes]
rs72797251	0.87[AFR][1000 genomes]
rs72797254	0.87[AFR][1000 genomes]
rs72797262	0.87[AFR][1000 genomes]
rs72797296	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028516	chr5:151896509-151930647	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151909200-151913200	Weak transcription	Fetal Brain Female	brain
2	chr5:151909600-151914000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:151909800-151912400	Weak transcription	Fetal Brain Male	brain
4	chr5:151909800-151913200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:151910400-151913600	Weak transcription	Fetal Lung	lung

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