Variant report

Variant	rs2963760
Chromosome Location	chr5:114699788-114699789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114684315..114686804-chr5:114699761..114703151,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10039741	0.91[EUR][1000 genomes]
rs10057172	1.00[CEU][hapmap]
rs10074300	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10477530	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17137659	0.91[EUR][1000 genomes]
rs2605198	1.00[CEU][hapmap]
rs2925164	0.82[EUR][1000 genomes]
rs2925165	0.82[EUR][1000 genomes]
rs2925167	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2925168	0.82[EUR][1000 genomes]
rs2925169	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2925171	0.91[EUR][1000 genomes]
rs2963743	0.82[EUR][1000 genomes]
rs2963744	0.82[EUR][1000 genomes]
rs2963746	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2963748	0.91[EUR][1000 genomes]
rs2963759	0.91[EUR][1000 genomes]
rs2963762	0.91[EUR][1000 genomes]
rs2963763	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2963766	0.91[EUR][1000 genomes]
rs2964551	0.82[EUR][1000 genomes]
rs2964552	0.82[EUR][1000 genomes]
rs2964553	0.82[EUR][1000 genomes]
rs2964554	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2964555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2964556	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2964557	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2964558	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2964559	0.91[EUR][1000 genomes]
rs62370830	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
2	chr5:114696400-114701400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:114696400-114701400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:114696400-114701400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:114696400-114701400	Weak transcription	NH-A	brain
6	chr5:114696400-114701400	Weak transcription	NHLF	lung
7	chr5:114696400-114701600	Weak transcription	Osteobl	bone
8	chr5:114696400-114701800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:114696600-114701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:114696600-114701400	Weak transcription	HSMMtube	muscle
11	chr5:114696600-114701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:114696600-114701600	Weak transcription	A549	lung
13	chr5:114696600-114701800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:114696800-114702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:114696800-114704200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:114699200-114700400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr5:114699400-114699800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:114699400-114700200	Enhancers	Pancreas	Pancrea
19	chr5:114699600-114699800	Enhancers	Brain Anterior Caudate	brain
20	chr5:114699600-114699800	Enhancers	Gastric	stomach
21	chr5:114699600-114699800	Enhancers	Left Ventricle	heart
22	chr5:114699600-114700000	Enhancers	Fetal Muscle Trunk	muscle
23	chr5:114699600-114700000	Enhancers	Psoas Muscle	Psoas
24	chr5:114699600-114700200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr5:114699600-114702600	Enhancers	Fetal Muscle Leg	muscle

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