Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10039741	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10057172	1.00[CEU][hapmap]
rs10074300	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477530	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17137659	1.00[EUR][1000 genomes]
rs2605198	1.00[CEU][hapmap]
rs2925164	0.90[EUR][1000 genomes]
rs2925165	0.90[EUR][1000 genomes]
rs2925167	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2925168	0.90[EUR][1000 genomes]
rs2925169	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2925171	1.00[EUR][1000 genomes]
rs2963743	0.90[EUR][1000 genomes]
rs2963744	0.90[EUR][1000 genomes]
rs2963745	0.86[EUR][1000 genomes]
rs2963746	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2963748	1.00[EUR][1000 genomes]
rs2963759	1.00[EUR][1000 genomes]
rs2963760	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2963762	1.00[EUR][1000 genomes]
rs2963763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2963766	1.00[EUR][1000 genomes]
rs2964551	0.90[EUR][1000 genomes]
rs2964552	0.90[EUR][1000 genomes]
rs2964553	0.90[EUR][1000 genomes]
rs2964554	1.00[CEU][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964555	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964556	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964559	1.00[EUR][1000 genomes]
rs62370830	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
2	chr5:114695400-114697400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:114696400-114701400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:114696400-114701400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:114696400-114701400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:114696400-114701400	Weak transcription	NH-A	brain
7	chr5:114696400-114701400	Weak transcription	NHLF	lung
8	chr5:114696400-114701600	Weak transcription	Osteobl	bone
9	chr5:114696400-114701800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:114696600-114701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:114696600-114701400	Weak transcription	HSMMtube	muscle
12	chr5:114696600-114701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:114696600-114701600	Weak transcription	A549	lung
14	chr5:114696600-114701800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:114696800-114702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:114696800-114704200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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