Variant report

Variant	rs2964558
Chromosome Location	chr5:114695860-114695861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10039741	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10057172	1.00[CEU][hapmap]
rs10074300	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477530	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17137659	1.00[EUR][1000 genomes]
rs2605198	1.00[CEU][hapmap]
rs2925164	0.90[EUR][1000 genomes]
rs2925165	0.90[EUR][1000 genomes]
rs2925167	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2925168	0.90[EUR][1000 genomes]
rs2925169	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2925171	1.00[EUR][1000 genomes]
rs2963743	0.90[EUR][1000 genomes]
rs2963744	0.90[EUR][1000 genomes]
rs2963745	0.86[EUR][1000 genomes]
rs2963746	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2963748	1.00[EUR][1000 genomes]
rs2963759	1.00[EUR][1000 genomes]
rs2963760	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2963762	1.00[EUR][1000 genomes]
rs2963763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2963766	1.00[EUR][1000 genomes]
rs2964551	0.90[EUR][1000 genomes]
rs2964552	0.90[EUR][1000 genomes]
rs2964553	0.90[EUR][1000 genomes]
rs2964554	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964555	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964556	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964559	1.00[EUR][1000 genomes]
rs62370830	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
2	chr5:114691200-114696000	Weak transcription	A549	lung
3	chr5:114694000-114697000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:114694400-114696200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:114694400-114696600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:114695200-114696800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:114695200-114697000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:114695400-114696400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:114695400-114696600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:114695400-114696600	Enhancers	Fetal Lung	lung
11	chr5:114695400-114696600	Enhancers	Stomach Mucosa	stomach
12	chr5:114695400-114696800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:114695400-114697400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:114695600-114696400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:114695600-114696800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:114695800-114696000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:114695800-114696000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr5:114695800-114696200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr5:114695800-114696400	Enhancers	Fetal Stomach	stomach
20	chr5:114695800-114696400	Enhancers	Osteobl	bone
21	chr5:114695800-114696600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr5:114695800-114696600	Enhancers	HSMMtube	muscle
23	chr5:114695800-114697200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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