Variant report

Variant	rs2964215
Chromosome Location	chr5:151963498-151963499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10056525	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10477025	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12054984	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12055147	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12655008	0.86[ASN][1000 genomes]
rs2961752	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2961753	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2964221	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2964254	0.83[ASN][1000 genomes]
rs2964260	0.87[ASN][1000 genomes]
rs2964263	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34106489	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34790040	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4457062	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4623134	0.81[ASN][1000 genomes]
rs6870096	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7733725	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2964215	RPS14	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151963200-151964600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:151963200-151964600	Enhancers	Brain Anterior Caudate	brain
3	chr5:151963400-151964000	Enhancers	Brain Angular Gyrus	brain
4	chr5:151963400-151964200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:151963400-151964400	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:151963400-151964600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:151963400-151964600	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links