Variant report

Variant	rs2964221
Chromosome Location	chr5:151946612-151946613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10477025	0.85[EUR][1000 genomes]
rs12054984	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12055147	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2961752	0.85[EUR][1000 genomes]
rs2961753	0.83[EUR][1000 genomes]
rs2964215	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2964263	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34106489	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34790040	0.82[EUR][1000 genomes]
rs4457062	0.82[EUR][1000 genomes]
rs6870096	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733725	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151937000-151946800	Weak transcription	Brain Substantia Nigra	brain
2	chr5:151938200-151947200	Weak transcription	Fetal Brain Male	brain
3	chr5:151944000-151947600	Enhancers	Brain Germinal Matrix	brain
4	chr5:151945200-151946800	Weak transcription	Fetal Brain Female	brain
5	chr5:151945600-151946800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:151945600-151947000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:151945600-151949200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:151945800-151947200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:151946000-151947000	Weak transcription	Brain Hippocampus Middle	brain
10	chr5:151946200-151948400	Weak transcription	Brain Angular Gyrus	brain
11	chr5:151946400-151946800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:151946600-151947200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:151946600-151948400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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