Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10056525	0.81[EUR][1000 genomes]
rs10477025	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12054984	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055147	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655008	0.95[ASN][1000 genomes]
rs2961752	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2961753	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964215	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2964221	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2964244	0.82[ASN][1000 genomes]
rs2964245	0.82[ASN][1000 genomes]
rs2964251	0.86[ASN][1000 genomes]
rs2964253	0.85[ASN][1000 genomes]
rs2964254	0.92[ASN][1000 genomes]
rs2964260	0.95[ASN][1000 genomes]
rs34106489	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34790040	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4457062	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6870096	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7733725	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151999400-152004200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:152002200-152005400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:152002600-152005000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:152002600-152005000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:152002600-152005000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:152002600-152005000	Weak transcription	Brain Germinal Matrix	brain
7	chr5:152002600-152005200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:152002600-152010400	Weak transcription	Fetal Lung	lung
9	chr5:152002600-152013600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:152002600-152014000	Weak transcription	Brain Substantia Nigra	brain
11	chr5:152002800-152008000	Weak transcription	Fetal Brain Male	brain
12	chr5:152003600-152004200	Enhancers	Spleen	Spleen
13	chr5:152004000-152005200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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