Variant report
| Variant | rs296606 |
|---|---|
| Chromosome Location | chr9:93786960-93786961 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs167200 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs296605 | 0.93[EUR][1000 genomes] |
| rs296607 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs296608 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs296609 | 0.82[EUR][1000 genomes] |
| rs296610 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs296625 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296640 | 0.88[EUR][1000 genomes] |
| rs296642 | 0.82[EUR][1000 genomes] |
| rs296644 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs296645 | 0.84[EUR][1000 genomes] |
| rs296646 | 0.88[EUR][1000 genomes] |
| rs296698 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs296699 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs296701 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs296702 | 0.82[EUR][1000 genomes] |
| rs296703 | 0.82[EUR][1000 genomes] |
| rs296730 | 0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs296731 | 0.83[AMR][1000 genomes] |
| rs387545 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs440807 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs450589 | 0.93[EUR][1000 genomes] |
| rs70514 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046989 | chr9:93353987-93800416 | Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:93786200-93787200 | Enhancers | Fetal Stomach | stomach |
