Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93682025..93684983-chr9:93787806..93789762,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs167200	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs296605	0.91[EUR][1000 genomes]
rs296606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296607	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs296608	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs296609	0.80[EUR][1000 genomes]
rs296610	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs296640	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs296642	0.81[EUR][1000 genomes]
rs296644	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296645	0.83[EUR][1000 genomes]
rs296646	0.87[EUR][1000 genomes]
rs296698	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs296699	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs296701	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs296702	0.81[EUR][1000 genomes]
rs296703	0.81[EUR][1000 genomes]
rs296721	0.86[JPT][hapmap]
rs296730	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs296731	0.81[CEU][hapmap];0.83[AMR][1000 genomes]
rs296733	0.81[CEU][hapmap]
rs296734	0.81[CEU][hapmap]
rs387545	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs440807	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs450589	0.91[EUR][1000 genomes]
rs70514	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv824979	chr9:93788105-93789448	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93788600-93794000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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