Variant report

Variant	rs296640
Chromosome Location	chr9:93777427-93777428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93757144..93760011-chr9:93776207..93778261,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260454	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10121342	0.80[ASN][1000 genomes]
rs12346333	0.80[ASN][1000 genomes]
rs167200	0.99[EUR][1000 genomes]
rs296605	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs296606	0.88[EUR][1000 genomes]
rs296607	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs296608	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs296609	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs296610	0.92[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs296625	0.87[EUR][1000 genomes]
rs296642	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs296644	0.95[EUR][1000 genomes]
rs296645	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs296646	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs296698	0.88[EUR][1000 genomes]
rs296699	0.88[EUR][1000 genomes]
rs296701	0.88[EUR][1000 genomes]
rs296702	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs296703	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs296721	0.80[CEU][hapmap];0.81[TSI][hapmap]
rs296730	0.88[EUR][1000 genomes]
rs296731	0.92[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs296732	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs296733	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs296734	0.92[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs387545	0.95[EUR][1000 genomes]
rs440807	0.95[EUR][1000 genomes]
rs450589	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs70514	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93765200-93780400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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