Variant report

Variant	rs297083
Chromosome Location	chr11:55586334-55586335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FAM48A	chr11:55586231-55586409	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:55586293-55586343	T-47D	breast:	n/a
2	chr11:55586293-55586343	GM12878	blood:	n/a
3	chr11:55586293-55586343	HNPCEpiC	eye:	n/a
4	chr11:55586293-55586343	ProgFib	skin:	n/a
5	chr11:55586293-55586343	HUVEC	blood vessel:	n/a
6	chr11:55586293-55586343	Hepatocyte	liver:	n/a
7	chr11:55586293-55586343	LNCaP	prostate:	n/a
8	chr11:55586293-55586343	GM06990	blood:	n/a
9	chr11:55586293-55586343	AG09309	skin:	n/a
10	chr11:55586293-55586343	HRPEpiC	eye:	n/a
11	chr11:55586293-55586343	SK-N-SH_RA	brain:	n/a
12	chr11:55586293-55586343	PrEC	prostate:	n/a
13	chr11:55586293-55586343	NHDF-neo	bronchial:	n/a
14	chr11:55586293-55586343	AG10803	skin:	n/a
15	chr11:55586293-55586343	HMEC	breast:	n/a
16	chr11:55586293-55586343	HepG2	liver:	n/a
17	chr11:55586293-55586343	ECC-1	luminal epithelium:	n/a
18	chr11:55586293-55586343	Jurkat	blood:	n/a
19	chr11:55586293-55586343	BE2_C	brain:	n/a
20	chr11:55586293-55586343	HCM	heart:	n/a
21	chr11:55586293-55586343	HAEpiC	amniotic membrane:	n/a
22	chr11:55586293-55586343	ovcar-3	ovarian:	n/a
23	chr11:55586293-55586343	AG09319	gingival:	n/a
24	chr11:55586293-55586343	SK-N-SH	brain:	n/a
25	chr11:55586293-55586343	HCT-116	colon:	n/a
26	chr11:55586293-55586343	Hela-S3	cervix:	n/a
27	chr11:55586293-55586343	A549	lung:	n/a
28	chr11:55586293-55586343	MCF-7	breast:	n/a
29	chr11:55586293-55586343	AG04450	lung:	fetal
30	chr11:55586293-55586343	HCF	heart:	n/a
31	chr11:55586293-55586343	U87	brain:	n/a
32	chr11:55586293-55586343	PANC-1	pancreas:	n/a
33	chr11:55586293-55586343	HL-60	blood:	n/a
34	chr11:55586293-55586343	AoSMC	blood vessel:	n/a
35	chr11:55586293-55586343	HIPEpiC	eye:	n/a
36	chr11:55586293-55586343	CMK	blood:	n/a
37	chr11:55586293-55586343	SK-N-MC	brain:	n/a
38	chr11:55586293-55586343	HEK293	kidney:	embryo
39	chr11:55586293-55586343	K562	blood:	n/a
40	chr11:55586293-55586343	BJ	skin:	n/a
41	chr11:55586293-55586343	AG04449	skin:	fetal
42	chr11:55586293-55586343	SKMC	muscle:	n/a
43	chr11:55586293-55586343	HPAEpiC	pulmonary alveolar:	n/a
44	chr11:55586293-55586343	NHBE	bronchial:	n/a
45	chr11:55586293-55586343	NB4	blood:	n/a
46	chr11:55586293-55586343	NH-A	brain:	n/a
47	chr11:55586293-55586343	NT2-D1	testis:	n/a
48	chr11:55586293-55586343	HCPEpiC	choroid plexus:	n/a
49	chr11:55586293-55586343	RPTEC	kidney:	n/a
50	chr11:55586293-55586343	GM12892	blood:	n/a

No data

Variant related genes	Relation type
OR5D18	TF binding region
OR5D18	CpG island

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2940752	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:81 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
7	esv2758271	chr11:55222420-55621884	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	esv2759828	chr11:55222420-55638112	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	nsv554801	chr11:55314151-55624360	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv428256	chr11:55317076-55621884	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	esv2757445	chr11:55339702-55638112	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv517440	chr11:55340379-55604412	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	esv2760216	chr11:55359460-55609683	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	nsv437717	chr11:55359656-55606693	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	esv3693085	chr11:55367889-55596313	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
16	nsv469958	chr11:55371020-55596313	Active TSS ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
17	nsv1051510	chr11:55376486-55603568	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv1036940	chr11:55376499-55603679	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	esv34637	chr11:55377006-55620699	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
20	esv34793	chr11:55377006-55620699	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
21	nsv832157	chr11:55420065-55594373	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	esv3470363	chr11:55422242-55603768	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	nsv1048634	chr11:55422327-55603228	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	nsv1053172	chr11:55422327-55603457	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv1037568	chr11:55422327-55603568	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	nsv1048654	chr11:55422327-55603679	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
27	nsv1042841	chr11:55422327-55611815	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
28	esv3470374	chr11:55422335-55603647	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
29	esv12024	chr11:55422345-55603590	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
30	nsv818832	chr11:55422586-55596313	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
31	nsv1040373	chr11:55429395-55603228	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
32	nsv1040617	chr11:55429395-55603568	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
33	nsv1037184	chr11:55429395-55603679	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
34	nsv1040984	chr11:55429395-55608261	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
35	nsv1040041	chr11:55429961-55603568	Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
36	nsv1052597	chr11:55431052-55608261	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
37	nsv818834	chr11:55437126-55596313	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
38	nsv1048776	chr11:55437707-55603568	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
39	nsv1035956	chr11:55439320-55603568	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
40	nsv1053068	chr11:55439320-55608261	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	nsv1048912	chr11:55439320-55609320	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
42	nsv1037538	chr11:55439320-55632773	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
43	nsv1052431	chr11:55439978-55603228	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
44	nsv1045667	chr11:55441603-55603568	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
45	nsv1050001	chr11:55444199-55603568	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
46	nsv1052294	chr11:55444199-55608261	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv430386	chr11:55445294-55595081	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
48	esv34561	chr11:55445294-55608261	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
49	esv34760	chr11:55445294-55608261	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
50	esv34812	chr11:55445294-55608261	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links