The 2.0 version of rSNPBase

Variant report

Variant rs297122
Chromosome Location chr2:39309141-39309142
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:39235400-39312000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr2:39235600-39327800 Weak transcription Esophagus oesophagus
3 chr2:39250200-39313600 Weak transcription Brain Angular Gyrus brain
4 chr2:39251600-39327200 Weak transcription HUVEC blood vessel
5 chr2:39258400-39322400 Weak transcription Thymus Thymus
6 chr2:39261000-39309800 Weak transcription Spleen Spleen
7 chr2:39261000-39318800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr2:39261000-39327800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr2:39271400-39320400 Weak transcription Right Ventricle heart
10 chr2:39272800-39310200 Weak transcription Fetal Heart heart
11 chr2:39278200-39314800 Weak transcription Left Ventricle heart
12 chr2:39280800-39334200 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr2:39282600-39327400 Weak transcription Hela-S3 cervix
14 chr2:39293400-39314800 Weak transcription Psoas Muscle Psoas
15 chr2:39293600-39310200 Weak transcription Fetal Lung lung
16 chr2:39293600-39322000 Weak transcription NHDF-Ad bronchial
17 chr2:39293800-39310200 Weak transcription Primary T cells from cord blood blood
18 chr2:39293800-39339400 Weak transcription Fetal Muscle Trunk muscle
19 chr2:39294000-39312000 Weak transcription K562 blood
20 chr2:39294000-39345200 Weak transcription Fetal Kidney kidney
21 chr2:39294200-39322000 Weak transcription Dnd41 blood
22 chr2:39294400-39322000 Weak transcription HSMM muscle
23 chr2:39294600-39310400 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr2:39294600-39313200 Weak transcription Fetal Intestine Large intestine
25 chr2:39294600-39320600 Weak transcription Primary B cells from cord blood blood
26 chr2:39294600-39320800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr2:39294600-39339400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr2:39294800-39320400 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr2:39294800-39322000 Weak transcription Primary B cells from peripheral blood blood
30 chr2:39295000-39310000 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr2:39296200-39316800 Weak transcription HepG2 liver
32 chr2:39296400-39309600 Weak transcription Ovary ovary
33 chr2:39296400-39320600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr2:39296400-39322600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr2:39296400-39339400 Weak transcription Aorta Aorta
36 chr2:39296600-39322200 Weak transcription NHEK skin
37 chr2:39297200-39320600 Weak transcription Adipose Nuclei Adipose
38 chr2:39297200-39322000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr2:39297400-39324600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr2:39298000-39315600 Weak transcription GM12878-XiMat blood
41 chr2:39299000-39310200 Weak transcription Right Atrium heart
42 chr2:39299600-39318800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr2:39299600-39319000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr2:39299600-39320600 Weak transcription Colon Smooth Muscle Colon
45 chr2:39299800-39310800 Weak transcription Brain Germinal Matrix brain
46 chr2:39300400-39312200 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr2:39301200-39322200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr2:39302800-39310000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr2:39304400-39310200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
50 chr2:39305000-39309800 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015