Variant report

Variant	rs297129
Chromosome Location	chr2:39299271-39299272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:39297576..39299588-chr2:39304376..39306926,2	K562	blood:
2	chr2:39298990..39301747-chr2:39313737..39315842,2	MCF-7	breast:
3	chr2:39298169..39301040-chr2:39304829..39306843,2	MCF-7	breast:

Extended variants
information (count: 152 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10153761	0.96[EUR][1000 genomes]
rs10165968	0.86[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.87[EUR][1000 genomes]
rs10166801	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes]
rs10172085	0.91[EUR][1000 genomes]
rs10172714	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs10177250	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs10183915	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs10186762	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs10190377	0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs10192250	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10194374	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes]
rs10200058	0.82[EUR][1000 genomes]
rs10201980	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs10206751	0.85[CHB][hapmap]
rs1043793	0.92[CHB][hapmap]
rs10439459	0.96[EUR][1000 genomes]
rs11124659	0.96[EUR][1000 genomes]
rs11124660	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11692687	0.96[EUR][1000 genomes]
rs12471731	0.84[CHB][hapmap]
rs12620003	0.87[EUR][1000 genomes]
rs12620071	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12622969	0.85[EUR][1000 genomes]
rs12712630	0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13031871	0.87[CHD][hapmap];0.86[GIH][hapmap]
rs13033392	0.82[EUR][1000 genomes]
rs1377860	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1377861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1377863	0.93[EUR][1000 genomes]
rs1377864	0.86[CHB][hapmap]
rs1454220	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1454222	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs1454223	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1454226	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs1454227	0.84[EUR][1000 genomes]
rs1454228	0.91[EUR][1000 genomes]
rs1470914	0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs1470915	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1840281	0.91[EUR][1000 genomes]
rs1869513	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2060987	0.84[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.84[ASN][1000 genomes]
rs2060988	0.85[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap]
rs2060989	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2123876	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs2123879	0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2123881	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs2168042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2168043	1.00[CHD][hapmap]
rs2278914	1.00[CEU][hapmap];0.85[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2290445	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.92[TSI][hapmap]
rs2305516	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2373474	0.94[EUR][1000 genomes]
rs2373495	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes]
rs2373496	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs2373497	0.86[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap]
rs2888585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes]
rs2924710	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2924714	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2969763	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297120	0.86[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs297121	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297122	0.99[ASN][1000 genomes]
rs297124	0.87[CHD][hapmap];0.90[GIH][hapmap];0.83[EUR][1000 genomes]
rs297125	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297127	0.83[EUR][1000 genomes]
rs297128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297131	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs297132	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs297133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297134	0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs297135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297136	0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs297137	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297139	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297140	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297141	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297142	0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.85[EUR][1000 genomes]
rs297143	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297144	0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs297145	0.85[EUR][1000 genomes]
rs297147	0.85[EUR][1000 genomes]
rs297148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs297151	0.87[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.87[EUR][1000 genomes]
rs297152	0.87[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs297153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs297155	0.80[EUR][1000 genomes]
rs297156	0.87[EUR][1000 genomes]
rs297157	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs297158	0.87[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs297159	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs297160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs297161	0.83[EUR][1000 genomes]
rs366840	0.85[EUR][1000 genomes]
rs3765058	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs378698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3796038	0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs388958	0.85[EUR][1000 genomes]
rs4142729	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap]
rs422854	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs451964	0.87[ASN][1000 genomes]
rs4670269	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[TSI][hapmap]
rs4670272	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs4670903	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs4670905	1.00[EUR][1000 genomes]
rs57378308	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58645871	0.93[EUR][1000 genomes]
rs59732351	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61405040	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6419600	0.85[EUR][1000 genomes]
rs6544183	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs6544185	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap]
rs6544191	1.00[EUR][1000 genomes]
rs6544194	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6544195	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6544197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6704656	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs6713281	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6716101	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs6725356	0.82[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6725644	0.94[EUR][1000 genomes]
rs6726833	0.82[EUR][1000 genomes]
rs6739568	0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6756184	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes]
rs6758330	0.90[CHD][hapmap];0.84[GIH][hapmap]
rs72909662	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7568552	0.91[EUR][1000 genomes]
rs7571052	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7577088	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs9309031	0.91[EUR][1000 genomes]
rs963730	0.83[CHB][hapmap]
rs963731	0.84[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs9679498	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs970409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs997344	0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873884	chr2:39154463-39332093	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2755359	chr2:39169049-39417849	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv873885	chr2:39200198-39573521	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1010874	chr2:39255376-39604535	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv535649	chr2:39255376-39604535	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv531346	chr2:39263225-39606367	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
7	nsv533348	chr2:39264345-39596169	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	nsv1014520	chr2:39270598-39596299	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	nsv535650	chr2:39270598-39596299	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	nsv1008198	chr2:39271472-39364035	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
11	nsv1009379	chr2:39271472-39604535	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	nsv581493	chr2:39277851-39547575	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	nsv581494	chr2:39277851-39626388	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
14	nsv533456	chr2:39281834-39596298	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
15	nsv581495	chr2:39282079-39475205	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs297129	SOS1	cis	multi-tissue	Pritchard

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39213800-39308000	Weak transcription	Pancreas	Pancrea
2	chr2:39227600-39303400	Weak transcription	Colonic Mucosa	Colon
3	chr2:39232600-39300000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:39235400-39312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:39235600-39327800	Weak transcription	Esophagus	oesophagus
6	chr2:39236000-39305600	Weak transcription	Gastric	stomach
7	chr2:39236200-39305600	Weak transcription	Lung	lung
8	chr2:39243200-39299600	Weak transcription	Brain Substantia Nigra	brain
9	chr2:39250200-39313600	Weak transcription	Brain Angular Gyrus	brain
10	chr2:39250400-39303000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:39251600-39327200	Weak transcription	HUVEC	blood vessel
12	chr2:39258400-39322400	Weak transcription	Thymus	Thymus
13	chr2:39261000-39309800	Weak transcription	Spleen	Spleen
14	chr2:39261000-39318800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr2:39261000-39327800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:39271400-39320400	Weak transcription	Right Ventricle	heart
17	chr2:39272800-39310200	Weak transcription	Fetal Heart	heart
18	chr2:39276200-39301400	Weak transcription	Fetal Intestine Small	intestine
19	chr2:39278200-39314800	Weak transcription	Left Ventricle	heart
20	chr2:39280800-39334200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:39281400-39301600	Weak transcription	Fetal Stomach	stomach
22	chr2:39282600-39327400	Weak transcription	Hela-S3	cervix
23	chr2:39289200-39303200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:39293400-39314800	Weak transcription	Psoas Muscle	Psoas
25	chr2:39293600-39310200	Weak transcription	Fetal Lung	lung
26	chr2:39293600-39322000	Weak transcription	NHDF-Ad	bronchial
27	chr2:39293800-39310200	Weak transcription	Primary T cells from cord blood	blood
28	chr2:39293800-39339400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr2:39294000-39305400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr2:39294000-39307000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr2:39294000-39312000	Weak transcription	K562	blood
32	chr2:39294000-39345200	Weak transcription	Fetal Kidney	kidney
33	chr2:39294200-39303000	Weak transcription	A549	lung
34	chr2:39294200-39322000	Weak transcription	Dnd41	blood
35	chr2:39294400-39299600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr2:39294400-39308200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr2:39294400-39322000	Weak transcription	HSMM	muscle
38	chr2:39294600-39299600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:39294600-39307000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:39294600-39310400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr2:39294600-39313200	Weak transcription	Fetal Intestine Large	intestine
42	chr2:39294600-39320600	Weak transcription	Primary B cells from cord blood	blood
43	chr2:39294600-39320800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr2:39294600-39339400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:39294800-39307400	Weak transcription	Fetal Thymus	thymus
46	chr2:39294800-39320400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr2:39294800-39322000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr2:39295000-39304000	Weak transcription	Liver	Liver
49	chr2:39295000-39310000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr2:39295800-39302600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links