Variant report

Variant	rs29722
Chromosome Location	chr19:21381179-21381180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10408496	0.96[EUR][1000 genomes]
rs10854042	0.93[EUR][1000 genomes]
rs1645791	0.82[ASN][1000 genomes]
rs1781861	0.82[ASN][1000 genomes]
rs1781862	0.82[ASN][1000 genomes]
rs1864208	0.93[EUR][1000 genomes]
rs193900	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2081183	0.82[ASN][1000 genomes]
rs2081186	0.82[ASN][1000 genomes]
rs2358806	0.93[EUR][1000 genomes]
rs2358808	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs250002	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs250003	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs29703	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs29705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs29715	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29720	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29725	0.94[ASN][1000 genomes]
rs29728	0.93[ASN][1000 genomes]
rs29729	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs30109	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs30111	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs388229	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs416001	0.92[ASN][1000 genomes]
rs57740	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs606174	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs606958	0.86[EUR][1000 genomes]
rs694208	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7248419	0.83[ASN][1000 genomes]
rs7250987	0.93[EUR][1000 genomes]
rs7251158	0.96[EUR][1000 genomes]
rs7251646	0.96[EUR][1000 genomes]
rs7254835	0.82[ASN][1000 genomes]
rs7254957	0.82[ASN][1000 genomes]
rs7256576	0.96[EUR][1000 genomes]
rs7257196	0.81[ASN][1000 genomes]
rs7259368	0.80[ASN][1000 genomes]
rs72620580	0.93[EUR][1000 genomes]
rs72620581	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3399352	chr19:21232738-21423323	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv911414	chr19:21355473-21454672	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3397817	chr19:21380545-21389996	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21370000-21382200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr19:21373200-21381800	Weak transcription	Dnd41	blood
3	chr19:21377800-21381800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:21378000-21381200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:21379200-21382400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr19:21380000-21381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:21380200-21381800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr19:21380400-21381200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr19:21380400-21382200	Enhancers	K562	blood
10	chr19:21380600-21389600	Enhancers	Ovary	ovary
11	chr19:21380800-21382000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr19:21381000-21381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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