Variant report

Variant	rs2972804
Chromosome Location	chr16:30709907-30709908
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr16:30709232-30710916	K562	blood:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
2	GABPA	chr16:30709742-30710863	K562	blood:	n/a	chr16:30710025-30710036 chr16:30710022-30710036 chr16:30710025-30710034 chr16:30710433-30710442
3	POLR2A	chr16:30709175-30710823	U87	brain:	n/a	n/a
4	MAX	chr16:30709238-30710884	K562	blood:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
5	YY1	chr16:30709128-30710058	HepG2	liver:	n/a	chr16:30709545-30709567 chr16:30709542-30709562 chr16:30709548-30709556 chr16:30709571-30709582 chr16:30709791-30709811 chr16:30709798-30709806 chr16:30709545-30709555 chr16:30709799-30709809 chr16:30709350-30709364 chr16:30709541-30709550 chr16:30709744-30709755
6	POLR2A	chr16:30709137-30710714	HepG2	liver:	n/a	n/a
7	YY1	chr16:30709027-30710769	K562	blood:	n/a	chr16:30709545-30709567 chr16:30709542-30709562 chr16:30709548-30709556 chr16:30709571-30709582 chr16:30709791-30709811 chr16:30709798-30709806 chr16:30710339-30710353 chr16:30710433-30710442 chr16:30709545-30709555 chr16:30709799-30709809 chr16:30709350-30709364 chr16:30709541-30709550 chr16:30709744-30709755
8	POLR2A	chr16:30709575-30710753	A549	lung:	n/a	n/a
9	EP300	chr16:30709481-30710006	H1-hESC	embryonic stem cell:	n/a	chr16:30709980-30709996 chr16:30709910-30709926 chr16:30709540-30709549
10	SRF	chr16:30709061-30710033	MCF-7	breast:	n/a	n/a
11	MAZ	chr16:30708484-30711599	IMR90	lung:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
12	MXI1	chr16:30708828-30711171	IMR90	lung:	n/a	n/a
13	ELK1	chr16:30709180-30710042	K562	blood:	n/a	n/a
14	POLR2A	chr16:30709168-30711008	Hela-S3	cervix:	n/a	n/a
15	TBP	chr16:30709149-30710915	K562	blood:	n/a	n/a
16	ZMIZ1	chr16:30709291-30710659	K562	blood:	n/a	n/a
17	SMC3	chr16:30709295-30710658	Hela-S3	cervix:	n/a	chr16:30710202-30710209
18	CHD2	chr16:30709113-30710657	K562	blood:	n/a	chr16:30709461-30709470 chr16:30709865-30709875 chr16:30709332-30709339
19	MYC	chr16:30709236-30710841	Hela-S3	cervix:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
20	SP4	chr16:30709235-30709925	H1-hESC	embryonic stem cell:	n/a	chr16:30709609-30709620
21	TAF1	chr16:30709291-30710765	A549	lung:	n/a	n/a
22	TAF1	chr16:30709838-30710024	GM12892	blood:	n/a	n/a
23	REST	chr16:30709299-30710933	A549	lung:	n/a	chr16:30709883-30709893
24	MAX	chr16:30709244-30710891	Hela-S3	cervix:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
25	MAX	chr16:30709028-30711042	HCT-116	colon:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
26	BRCA1	chr16:30709204-30709950	Hela-S3	cervix:	n/a	chr16:30709461-30709470
27	EP300	chr16:30709247-30709999	HepG2	liver:	n/a	chr16:30709980-30709996 chr16:30709478-30709487 chr16:30709910-30709926 chr16:30709540-30709549
28	CREB1	chr16:30709134-30710723	H1-hESC	embryonic stem cell:	n/a	n/a
29	SIX5	chr16:30708988-30710200	A549	lung:	n/a	chr16:30709375-30709384 chr16:30709069-30709085 chr16:30709069-30709085 chr16:30709373-30709382
30	POLR2A	chr16:30709172-30710794	K562	blood:	n/a	n/a
31	POLR2A	chr16:30709128-30710672	PBDE	blood:	n/a	n/a
32	POLR2A	chr16:30709293-30710549	GM10847	blood:	n/a	n/a
33	PML	chr16:30709132-30710921	K562	blood:	n/a	n/a
34	EGR1	chr16:30709261-30709956	ECC-1	luminal epithelium:	n/a	chr16:30709372-30709396 chr16:30709868-30709878 chr16:30709857-30709871
35	CHD1	chr16:30709317-30710663	GM12878	blood:	n/a	chr16:30709461-30709470 chr16:30709865-30709875 chr16:30709332-30709339
36	CHD1	chr16:30708781-30711645	IMR90	lung:	n/a	chr16:30709461-30709470 chr16:30709865-30709875 chr16:30709332-30709339
37	MYC	chr16:30709286-30710774	HepG2	liver:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
38	MYC	chr16:30709221-30710864	NB4	blood:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
39	RFX5	chr16:30708865-30710169	K562	blood:	n/a	n/a
40	TAF1	chr16:30709108-30710560	H1-neurons	neurons:	n/a	n/a
41	TCF12	chr16:30709039-30711053	A549	lung:	n/a	n/a
42	REST	chr16:30709246-30710189	H1-neurons	neurons:	n/a	chr16:30709883-30709893
43	YY1	chr16:30709096-30710055	SK-N-SH_RA	brain:	n/a	chr16:30709545-30709567 chr16:30709542-30709562 chr16:30709548-30709556 chr16:30709571-30709582 chr16:30709791-30709811 chr16:30709798-30709806 chr16:30709545-30709555 chr16:30709799-30709809 chr16:30709350-30709364 chr16:30709541-30709550 chr16:30709744-30709755
44	YY1	chr16:30709101-30710869	GM12892	blood:	n/a	chr16:30709545-30709567 chr16:30709542-30709562 chr16:30709548-30709556 chr16:30709571-30709582 chr16:30709791-30709811 chr16:30709798-30709806 chr16:30710339-30710353 chr16:30710433-30710442 chr16:30709545-30709555 chr16:30709799-30709809 chr16:30709350-30709364 chr16:30709541-30709550 chr16:30709744-30709755
45	POLR2A	chr16:30709204-30710686	GM15510	blood:	n/a	n/a
46	YY1	chr16:30709303-30710032	HCT-116	colon:	n/a	chr16:30709545-30709567 chr16:30709542-30709562 chr16:30709548-30709556 chr16:30709571-30709582 chr16:30709791-30709811 chr16:30709798-30709806 chr16:30709545-30709555 chr16:30709799-30709809 chr16:30709350-30709364 chr16:30709541-30709550 chr16:30709744-30709755
47	FOSL2	chr16:30709427-30709956	A549	lung:	n/a	n/a
48	TEAD4	chr16:30709087-30710993	K562	blood:	n/a	n/a
49	SIN3AK20	chr16:30709059-30711134	MCF-7	breast:	n/a	n/a
50	GTF2F1	chr16:30709325-30710397	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:29816495..29818373-chr16:30708327..30710774,2	K562	blood:
2	chr16:30709723..30710711-chr6:26157818..26158411,2	HCT-116	colon:
3	chr16:30708214..30710330-chr16:31190333..31193156,2	K562	blood:
4	chr16:30455606..30458021-chr16:30708271..30711860,5	K562	blood:
5	chr16:30709030..30710951-chr16:30959452..30961503,2	MCF-7	breast:
6	chr16:30667783..30674540-chr16:30707310..30714065,38	K562	blood:
7	chr16:30708299..30711208-chr16:30931702..30936734,5	MCF-7	breast:
8	chr16:30369886..30371566-chr16:30709184..30711888,2	MCF-7	breast:
9	chr16:30197379..30199709-chr16:30708853..30710594,2	MCF-7	breast:
10	chr16:30439151..30441186-chr16:30708286..30710869,2	K562	blood:
11	chr16:30708426..30712348-chr16:30772033..30775384,7	MCF-7	breast:
12	chr16:30709031..30710824-chr16:31084721..31086312,2	MCF-7	breast:
13	chr16:30709821..30710806-chr17:80056136..80056748,2	Hela-S3	cervix:
14	chr16:30709313..30710215-chr18:32924158..32924743,2	Hela-S3	cervix:
15	chr16:30709832..30711688-chr16:30788806..30790347,2	MCF-7	breast:
16	chr16:30537007..30539690-chr16:30709715..30713303,3	K562	blood:
17	chr16:30381749..30384813-chr16:30709284..30711839,3	MCF-7	breast:
18	chr16:30707963..30711732-chr16:30932569..30936139,6	K562	blood:
19	chr16:30709290..30710319-chr5:43483061..43484030,3	Hela-S3	cervix:
20	chr16:30123424..30125904-chr16:30709036..30711969,2	K562	blood:
21	chr16:30708449..30710196-chr16:31084025..31085788,2	MCF-7	breast:
22	chr16:30674519..30676444-chr16:30709698..30711527,2	K562	blood:
23	chr16:30708929..30712034-chr16:30758251..30761730,4	K562	blood:
24	chr16:30194759..30196474-chr16:30708321..30710929,2	K562	blood:
25	chr16:30709356..30710125-chr6:7590409..7591242,2	Hela-S3	cervix:
26	chr16:30707422..30715768-chr16:30721242..30729414,24	MCF-7	breast:
27	chr16:30708356..30712729-chr16:30907440..30911095,7	K562	blood:
28	chr16:30428007..30431562-chr16:30708422..30711318,5	MCF-7	breast:
29	chr16:30708909..30711747-chr16:30932178..30935236,6	MCF-7	breast:
30	chr16:30707234..30713291-chr16:30747398..30755461,17	MCF-7	breast:
31	chr16:30661013..30665220-chr16:30708206..30710953,10	MCF-7	breast:
32	chr16:30709491..30711617-chr16:30777557..30779616,3	K562	blood:
33	chr16:30077027..30079067-chr16:30707844..30710245,2	K562	blood:
34	chr16:30660833..30664856-chr16:30708365..30711306,8	MCF-7	breast:
35	chr16:30660775..30663969-chr16:30709456..30712373,8	K562	blood:
36	chr16:30709290..30710189-chr3:25830936..25831867,2	Hela-S3	cervix:
37	chr16:30707181..30712037-chr16:30757231..30762842,12	MCF-7	breast:
38	chr16:30074836..30077502-chr16:30708652..30710947,2	MCF-7	breast:
39	chr16:30709403..30709950-chr9:127630845..127631643,2	Hela-S3	cervix:
40	chr16:30708652..30711335-chr16:30903340..30907064,3	K562	blood:
41	chr16:30709500..30711717-chr16:31190248..31191999,2	MCF-7	breast:
42	chr16:30706444..30711338-chr16:30796616..30799537,5	MCF-7	breast:
43	chr16:30678341..30683972-chr16:30708353..30711640,7	K562	blood:
44	chr16:30709775..30710342-chr16:30904927..30905686,2	Hela-S3	cervix:
45	chr16:30678548..30685862-chr16:30707986..30712280,7	K562	blood:
46	chr16:30709802..30712559-chr16:30757474..30761628,7	MCF-7	breast:
47	chr16:30388749..30390462-chr16:30709346..30711383,3	MCF-7	breast:
48	chr16:30709896..30710420-chr5:137368187..137368933,2	Hela-S3	cervix:
49	chr16:30708652..30711178-chr16:30903340..30907064,5	K562	blood:
50	chr16:30708001..30712248-chr16:30758568..30761366,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C16orf93-1	chr16:30709457-30710379	ENSG00000261840.1

Variant related genes	Relation type
SRCAP	TF binding region
ENSG00000168566	Chromatin interaction
ENSG00000137073	Chromatin interaction
ENSG00000262721	Chromatin interaction
ENSG00000102879	Chromatin interaction
ENSG00000260083	Chromatin interaction
ENSG00000099385	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000179958	Chromatin interaction
ENSG00000150281	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000260899	Chromatin interaction
ENSG00000120738	Chromatin interaction
ENSG00000175938	Chromatin interaction
ENSG00000211591	Chromatin interaction
ENSG00000235560	Chromatin interaction
ENSG00000180209	Chromatin interaction
ENSG00000262026	Chromatin interaction
ENSG00000180035	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000169955	Chromatin interaction
ENSG00000232533	Chromatin interaction
ENSG00000246323	Chromatin interaction
ENSG00000136950	Chromatin interaction
ENSG00000199787	Chromatin interaction
ENSG00000169710	Chromatin interaction
ENSG00000080603	Chromatin interaction
ENSG00000196118	Chromatin interaction
ENSG00000179918	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000206755	Chromatin interaction
ENSG00000175505	Chromatin interaction
ENSG00000149923	Chromatin interaction
ENSG00000102870	Chromatin interaction
ENSG00000102886	Chromatin interaction
ENSG00000149925	Chromatin interaction
ENSG00000203499	Chromatin interaction
ENSG00000261487	Chromatin interaction
ENSG00000151092	Chromatin interaction
ENSG00000099364	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000172466	Chromatin interaction
ENSG00000156873	Chromatin interaction
ENSG00000167394	Chromatin interaction
ENSG00000151093	Chromatin interaction
ENSG00000103495	Chromatin interaction
ENSG00000031003	Chromatin interaction
ENSG00000156858	Chromatin interaction
ENSG00000099381	Chromatin interaction
ENSG00000179965	Chromatin interaction
ENSG00000126653	Chromatin interaction
ENSG00000103549	Chromatin interaction
ENSG00000167395	Chromatin interaction
ENSG00000222287	Chromatin interaction
ENSG00000156860	Chromatin interaction
ENSG00000169221	Chromatin interaction
ENSG00000169957	Chromatin interaction
ENSG00000199071	Chromatin interaction
ENSG00000261459	Chromatin interaction
ENSG00000229809	Chromatin interaction
ENSG00000265991	Chromatin interaction
ENSG00000261416	Chromatin interaction
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10782000	1.00[AMR][1000 genomes]
rs11150594	1.00[AMR][1000 genomes]
rs11648654	1.00[AMR][1000 genomes]
rs12596375	1.00[AMR][1000 genomes]
rs12596394	1.00[AMR][1000 genomes]
rs12598056	1.00[AMR][1000 genomes]
rs12931844	1.00[AMR][1000 genomes]
rs12933849	1.00[AMR][1000 genomes]
rs1550477	1.00[AMR][1000 genomes]
rs2053426	1.00[AMR][1000 genomes]
rs2099754	1.00[AMR][1000 genomes]
rs2099755	1.00[AMR][1000 genomes]
rs2919430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2919431	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2919432	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2919433	1.00[AMR][1000 genomes]
rs2972807	0.90[AFR][1000 genomes]
rs2972808	0.80[AFR][1000 genomes]
rs2972809	0.80[AFR][1000 genomes]
rs2972815	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4617878	1.00[AMR][1000 genomes]
rs4889488	1.00[AMR][1000 genomes]
rs4889494	1.00[AMR][1000 genomes]
rs4889500	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889501	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889503	1.00[AMR][1000 genomes]
rs4889504	1.00[AMR][1000 genomes]
rs4889505	1.00[AMR][1000 genomes]
rs4889508	1.00[AMR][1000 genomes]
rs4889510	1.00[AMR][1000 genomes]
rs4889528	1.00[AMR][1000 genomes]
rs55635617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56038936	1.00[AMR][1000 genomes]
rs56209507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57225118	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57643871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57877247	1.00[AMR][1000 genomes]
rs6565203	1.00[AMR][1000 genomes]
rs6565204	1.00[AMR][1000 genomes]
rs6565205	1.00[AMR][1000 genomes]
rs6565208	1.00[AMR][1000 genomes]
rs6565209	1.00[AMR][1000 genomes]
rs6565210	1.00[AMR][1000 genomes]
rs7185136	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7188077	1.00[AMR][1000 genomes]
rs7193412	1.00[AMR][1000 genomes]
rs7194763	1.00[AMR][1000 genomes]
rs7195583	1.00[AMR][1000 genomes]
rs7195612	1.00[AMR][1000 genomes]
rs73524581	1.00[AMR][1000 genomes]
rs73524584	1.00[AMR][1000 genomes]
rs73536457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536488	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045550	1.00[AMR][1000 genomes]
rs8045624	1.00[AMR][1000 genomes]
rs8046609	1.00[AMR][1000 genomes]
rs8047743	1.00[AMR][1000 genomes]
rs8048656	1.00[AMR][1000 genomes]
rs8049589	1.00[AMR][1000 genomes]
rs8050578	1.00[AMR][1000 genomes]
rs8058475	1.00[AMR][1000 genomes]
rs893926	1.00[AMR][1000 genomes]
rs893927	1.00[AMR][1000 genomes]
rs9921630	1.00[AMR][1000 genomes]
rs9934046	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941201	1.00[AMR][1000 genomes]
rs9941300	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
7	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
8	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
9	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
10	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
11	esv3372612	chr16:30709076-30711624	Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30708600-30711200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:30708800-30710800	Active TSS	Brain Anterior Caudate	brain
3	chr16:30708800-30710800	Active TSS	Fetal Lung	lung
4	chr16:30708800-30711000	Active TSS	Fetal Kidney	kidney
5	chr16:30708800-30711200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:30708800-30711600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:30709000-30710400	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr16:30709000-30710400	Active TSS	Fetal Muscle Leg	muscle
9	chr16:30709000-30710600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr16:30709000-30710600	Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr16:30709000-30710600	Active TSS	Brain Hippocampus Middle	brain
12	chr16:30709000-30710600	Active TSS	Duodenum Mucosa	Duodenum
13	chr16:30709000-30710600	Active TSS	Fetal Brain Female	brain
14	chr16:30709000-30710600	Active TSS	Fetal Muscle Trunk	muscle
15	chr16:30709000-30710600	Active TSS	Fetal Stomach	stomach
16	chr16:30709000-30710800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr16:30709000-30710800	Active TSS	Brain Substantia Nigra	brain
18	chr16:30709000-30710800	Active TSS	Placenta	Placenta
19	chr16:30709000-30710800	Active TSS	Rectal Smooth Muscle	rectum
20	chr16:30709000-30710800	Active TSS	Thymus	Thymus
21	chr16:30709000-30711000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr16:30709000-30711000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr16:30709000-30711000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:30709000-30711000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr16:30709000-30711000	Active TSS	Fetal Intestine Large	intestine
26	chr16:30709000-30711000	Active TSS	GM12878-XiMat	blood
27	chr16:30709000-30711000	Active TSS	NHDF-Ad	bronchial
28	chr16:30709000-30711200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr16:30709000-30711200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr16:30709000-30711200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr16:30709000-30711200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr16:30709000-30711200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr16:30709000-30711200	Active TSS	Colonic Mucosa	Colon
34	chr16:30709000-30711200	Active TSS	Gastric	stomach
35	chr16:30709000-30711200	Active TSS	Psoas Muscle	Psoas
36	chr16:30709000-30711200	Active TSS	Right Ventricle	heart
37	chr16:30709000-30711200	Active TSS	HSMMtube	muscle
38	chr16:30709000-30711200	Active TSS	K562	blood
39	chr16:30709000-30711200	Active TSS	NHLF	lung
40	chr16:30709000-30711400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr16:30709000-30711400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr16:30709000-30711400	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr16:30709200-30710400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr16:30709200-30710400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr16:30709200-30710600	Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr16:30709200-30710600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr16:30709200-30710600	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr16:30709200-30710600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr16:30709200-30710600	Active TSS	Liver	Liver
50	chr16:30709200-30710600	Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links