Variant report

Variant	rs73536498
Chromosome Location	chr16:30712272-30712273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:30711868-30712404	K562	blood:	n/a	n/a
2	MXI1	chr16:30708677-30712360	SK-N-SH	brain:	n/a	n/a

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30667783..30674540-chr16:30707310..30714065,38	K562	blood:
2	chr16:30708426..30712348-chr16:30772033..30775384,7	MCF-7	breast:
3	chr16:30708502..30711286-chr16:30712051..30717294,7	K562	blood:
4	chr16:30537007..30539690-chr16:30709715..30713303,3	K562	blood:
5	chr16:30707422..30715768-chr16:30721242..30729414,24	MCF-7	breast:
6	chr16:30708356..30712729-chr16:30907440..30911095,7	K562	blood:
7	chr16:30707234..30713291-chr16:30747398..30755461,17	MCF-7	breast:
8	chr16:30660775..30663969-chr16:30709456..30712373,8	K562	blood:
9	chr16:30678548..30685862-chr16:30707986..30712280,7	K562	blood:
10	chr16:30709802..30712559-chr16:30757474..30761628,7	MCF-7	breast:
11	chr16:30707557..30712450-chr16:30785751..30791890,10	K562	blood:
12	chr16:30665738..30673826-chr16:30707321..30713630,33	K562	blood:
13	chr16:30665347..30684079-chr16:30697204..30714344,66	MCF-7	breast:
14	chr16:30667507..30674392-chr16:30704170..30712522,40	MCF-7	breast:
15	chr16:30708138..30712367-chr16:30742355..30746018,6	K562	blood:
16	chr16:30707689..30714423-chr16:30749050..30754714,18	MCF-7	breast:
17	chr16:30708760..30712474-chr16:30717976..30728042,17	K562	blood:

No data

Variant related genes	Relation type
SRCAP	TF binding region
ENSG00000261840	TF binding region
ENSG00000206755	Chromatin interaction
ENSG00000196118	Chromatin interaction
ENSG00000156873	Chromatin interaction
ENSG00000156860	Chromatin interaction
ENSG00000103549	Chromatin interaction
ENSG00000150281	Chromatin interaction
ENSG00000169957	Chromatin interaction
ENSG00000260899	Chromatin interaction
ENSG00000156858	Chromatin interaction
ENSG00000080603	Chromatin interaction
ENSG00000262026	Chromatin interaction
ENSG00000261840	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10782000	1.00[AMR][1000 genomes]
rs11150594	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11648654	1.00[AMR][1000 genomes]
rs12596375	1.00[AMR][1000 genomes]
rs12596394	1.00[AMR][1000 genomes]
rs12598056	1.00[AMR][1000 genomes]
rs12931844	1.00[AMR][1000 genomes]
rs12933849	1.00[AMR][1000 genomes]
rs1550477	1.00[AMR][1000 genomes]
rs2053426	1.00[AMR][1000 genomes]
rs2099754	1.00[AMR][1000 genomes]
rs2099755	1.00[AMR][1000 genomes]
rs2919430	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2919431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2919432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2919433	1.00[AMR][1000 genomes]
rs2972804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972807	0.94[AFR][1000 genomes]
rs2972808	0.84[AFR][1000 genomes]
rs2972809	0.84[AFR][1000 genomes]
rs2972815	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4617878	1.00[AMR][1000 genomes]
rs4889488	1.00[AMR][1000 genomes]
rs4889494	1.00[AMR][1000 genomes]
rs4889500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889501	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889503	1.00[AMR][1000 genomes]
rs4889504	1.00[AMR][1000 genomes]
rs4889505	1.00[AMR][1000 genomes]
rs4889508	1.00[AMR][1000 genomes]
rs4889510	1.00[AMR][1000 genomes]
rs4889528	1.00[AMR][1000 genomes]
rs55635617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56038936	1.00[AMR][1000 genomes]
rs56209507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57225118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57643871	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57877247	1.00[AMR][1000 genomes]
rs6565203	1.00[AMR][1000 genomes]
rs6565204	1.00[AMR][1000 genomes]
rs6565205	1.00[AMR][1000 genomes]
rs6565208	1.00[AMR][1000 genomes]
rs6565209	1.00[AMR][1000 genomes]
rs6565210	1.00[AMR][1000 genomes]
rs7185136	1.00[AMR][1000 genomes]
rs7188077	1.00[AMR][1000 genomes]
rs7193412	1.00[AMR][1000 genomes]
rs7194763	1.00[AMR][1000 genomes]
rs7195583	1.00[AMR][1000 genomes]
rs7195612	1.00[AMR][1000 genomes]
rs73524581	1.00[AMR][1000 genomes]
rs73524584	1.00[AMR][1000 genomes]
rs73536457	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045550	1.00[AMR][1000 genomes]
rs8045624	1.00[AMR][1000 genomes]
rs8046609	1.00[AMR][1000 genomes]
rs8047743	1.00[AMR][1000 genomes]
rs8048656	1.00[AMR][1000 genomes]
rs8049589	1.00[AMR][1000 genomes]
rs8050578	1.00[AMR][1000 genomes]
rs8058475	1.00[AMR][1000 genomes]
rs893926	1.00[AMR][1000 genomes]
rs893927	1.00[AMR][1000 genomes]
rs9921630	1.00[AMR][1000 genomes]
rs9934046	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941201	1.00[AMR][1000 genomes]
rs9941300	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
7	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
8	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
9	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
10	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
11	esv33681	chr16:30711208-30714408	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers	TF binding region Chromatin interactive region	33 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30711000-30712400	Transcr. at gene 5' and 3'	A549	lung
2	chr16:30711200-30712400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:30711200-30712400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr16:30711200-30712400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr16:30711200-30712400	Genic enhancers	Fetal Muscle Leg	muscle
6	chr16:30711400-30712400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr16:30711400-30712400	Genic enhancers	Left Ventricle	heart
8	chr16:30711400-30712600	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:30711400-30712600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr16:30711400-30712600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr16:30711400-30712600	Transcr. at gene 5' and 3'	HSMM	muscle
12	chr16:30711400-30712600	Transcr. at gene 5' and 3'	K562	blood
13	chr16:30711400-30712800	Genic enhancers	Brain Anterior Caudate	brain
14	chr16:30711400-30713000	Genic enhancers	Placenta Amnion	Placenta Amnion
15	chr16:30711400-30713000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
16	chr16:30711400-30713400	Weak transcription	Aorta	Aorta
17	chr16:30711400-30714400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:30711400-30751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr16:30711400-30757000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr16:30711600-30712400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr16:30711600-30712400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr16:30711600-30712400	Genic enhancers	Brain Hippocampus Middle	brain
23	chr16:30711600-30712400	Genic enhancers	Fetal Intestine Small	intestine
24	chr16:30711600-30712400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
25	chr16:30711600-30712600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr16:30711600-30712600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr16:30711600-30712600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:30711600-30712600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr16:30711600-30712600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr16:30711600-30712600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr16:30711600-30713000	Genic enhancers	Dnd41	blood
32	chr16:30711600-30713200	Strong transcription	Brain Germinal Matrix	brain
33	chr16:30711600-30713400	Strong transcription	Primary B cells from cord blood	blood
34	chr16:30711600-30720400	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr16:30711600-30724600	Strong transcription	Esophagus	oesophagus
36	chr16:30711600-30727200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr16:30711600-30735600	Strong transcription	Duodenum Mucosa	Duodenum
38	chr16:30711600-30735800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr16:30711600-30736000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr16:30711600-30738000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr16:30711600-30738800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr16:30711600-30750800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr16:30711600-30752000	Strong transcription	Fetal Lung	lung
44	chr16:30711600-30756200	Strong transcription	Thymus	Thymus
45	chr16:30711800-30712400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
46	chr16:30711800-30712400	Genic enhancers	Liver	Liver
47	chr16:30711800-30712400	Strong transcription	Small Intestine	intestine
48	chr16:30711800-30712600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr16:30711800-30712600	Enhancers	Fetal Heart	heart
50	chr16:30711800-30712600	Strong transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links