Variant report

Variant	rs2973458
Chromosome Location	chr5:90528669-90528670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2941890	0.86[YRI][hapmap]
rs2941892	0.86[YRI][hapmap]
rs2941904	0.81[AFR][1000 genomes]
rs2973461	0.86[YRI][hapmap]
rs2973462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2973464	0.84[YRI][hapmap]
rs2973467	0.81[YRI][hapmap]
rs2973469	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2973473	0.86[AFR][1000 genomes]
rs4311449	0.90[AFR][1000 genomes]
rs4521517	0.90[AFR][1000 genomes]
rs6863569	0.81[AFR][1000 genomes]
rs6868305	0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs7709505	0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90521200-90530400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:90525000-90542800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:90525200-90530400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:90526400-90530400	Weak transcription	Ovary	ovary
5	chr5:90526600-90530400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:90526800-90530400	Weak transcription	Adipose Nuclei	Adipose
7	chr5:90528400-90529400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:90528600-90533600	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links