Variant report

Variant	rs6868305
Chromosome Location	chr5:90583753-90583754
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12110268	1.00[MEX][hapmap]
rs2941904	0.83[AFR][1000 genomes]
rs2973458	0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs2973462	0.92[AFR][1000 genomes]
rs2973469	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs4311449	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4521517	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59490962	1.00[AMR][1000 genomes]
rs6863569	1.00[AMR][1000 genomes]
rs6866036	1.00[AMR][1000 genomes]
rs7709505	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90576800-90583800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:90577600-90583800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:90577800-90583800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:90579800-90584800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:90580000-90583800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:90580200-90584800	Weak transcription	Small Intestine	intestine
7	chr5:90580400-90583800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:90580400-90583800	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:90580400-90587200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:90581600-90583800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:90583400-90584000	Enhancers	Placenta	Placenta
12	chr5:90583400-90585000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:90583600-90583800	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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