Variant report

Variant	rs2973462
Chromosome Location	chr5:90533590-90533591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2941904	0.81[AFR][1000 genomes]
rs2973458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2973469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2973473	0.86[AFR][1000 genomes]
rs4311449	0.90[AFR][1000 genomes]
rs4521517	0.90[AFR][1000 genomes]
rs6863569	0.81[AFR][1000 genomes]
rs6868305	0.92[AFR][1000 genomes]
rs7709505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90525000-90542800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:90528600-90533600	Weak transcription	K562	blood
3	chr5:90530800-90539600	Weak transcription	Pancreas	Pancrea
4	chr5:90531400-90534200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:90533400-90533600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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