Variant report

Variant	rs297530
Chromosome Location	chr11:121243291-121243292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10750187	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10790444	0.95[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10790445	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892742	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12294794	0.84[CHB][hapmap]
rs1529579	0.95[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs297527	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297528	0.85[EUR][1000 genomes]
rs297529	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936624	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936625	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903105	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72991	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs297530	C11orf32	Cis_1M	lymphoblastoid	RTeQTL
rs297530	SLC37A4	cis	parietal	SCAN
rs297530	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs297530	SORL1	cis	lymphoblastoid	seeQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121238400-121243600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:121238600-121243400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:121238800-121243400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:121239200-121243600	Weak transcription	Thymus	Thymus
6	chr11:121239400-121243400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:121239400-121243400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:121239400-121244600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:121239600-121245000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
11	chr11:121239800-121243400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:121240000-121243400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:121240000-121243600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:121240000-121243600	Weak transcription	Primary T cells from cord blood	blood
15	chr11:121240200-121243400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:121240200-121243400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:121242000-121243400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:121242000-121244200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:121242000-121245200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr11:121242000-121246400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:121242200-121243600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr11:121242400-121243400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:121242400-121243600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr11:121242400-121245000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr11:121242600-121243400	Enhancers	Fetal Intestine Small	intestine
26	chr11:121242600-121244200	Enhancers	Duodenum Mucosa	Duodenum
27	chr11:121242600-121244400	Enhancers	Dnd41	blood
28	chr11:121242600-121244800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:121242600-121244800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:121242600-121245000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:121242600-121245600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr11:121242600-121246000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr11:121242600-121246400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:121242600-121246400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr11:121242600-121251200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:121242800-121243400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr11:121242800-121243400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr11:121242800-121243800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:121242800-121244400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:121243000-121243600	Enhancers	Primary B cells from peripheral blood	blood
41	chr11:121243000-121243600	Weak transcription	Fetal Intestine Large	intestine
42	chr11:121243000-121244000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:121243000-121244400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr11:121243000-121247600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr11:121243000-121247600	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr11:121243000-121251000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr11:121243200-121243400	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr11:121243200-121243600	Enhancers	Primary B cells from cord blood	blood
49	chr11:121243200-121244400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:121243200-121244400	Flanking Active TSS	GM12878-XiMat	blood

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