Variant report

Variant	rs297528
Chromosome Location	chr11:121243423-121243424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10750187	0.85[EUR][1000 genomes]
rs10790444	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs10790445	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10892742	0.87[EUR][1000 genomes]
rs12275074	0.91[ASN][1000 genomes]
rs1529578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1529579	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs297527	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs297529	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs297530	0.85[EUR][1000 genomes]
rs35715037	0.93[ASN][1000 genomes]
rs4936618	0.93[ASN][1000 genomes]
rs4936621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4936624	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs4936625	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61903105	0.83[EUR][1000 genomes]
rs6589878	0.93[ASN][1000 genomes]
rs7111793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7114702	0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs297528	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs297528	C11orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121238400-121243600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:121239200-121243600	Weak transcription	Thymus	Thymus
4	chr11:121239400-121244600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:121239600-121245000	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
7	chr11:121240000-121243600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:121240000-121243600	Weak transcription	Primary T cells from cord blood	blood
9	chr11:121242000-121244200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:121242000-121245200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr11:121242000-121246400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:121242200-121243600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:121242400-121243600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:121242400-121245000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr11:121242600-121244200	Enhancers	Duodenum Mucosa	Duodenum
16	chr11:121242600-121244400	Enhancers	Dnd41	blood
17	chr11:121242600-121244800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:121242600-121244800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:121242600-121245000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:121242600-121245600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr11:121242600-121246000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr11:121242600-121246400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:121242600-121246400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr11:121242600-121251200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:121242800-121243800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:121242800-121244400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:121243000-121243600	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:121243000-121243600	Weak transcription	Fetal Intestine Large	intestine
29	chr11:121243000-121244000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:121243000-121244400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr11:121243000-121247600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr11:121243000-121247600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr11:121243000-121251000	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr11:121243200-121243600	Enhancers	Primary B cells from cord blood	blood
35	chr11:121243200-121244400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:121243200-121244400	Flanking Active TSS	GM12878-XiMat	blood
37	chr11:121243200-121244800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr11:121243200-121245800	Enhancers	Fetal Thymus	thymus
39	chr11:121243200-121246600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:121243200-121247600	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr11:121243400-121243600	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr11:121243400-121244200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr11:121243400-121244200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr11:121243400-121244200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr11:121243400-121244200	Enhancers	Primary hematopoietic stem cells	blood
46	chr11:121243400-121244200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr11:121243400-121244200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr11:121243400-121244200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:121243400-121244200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:121243400-121244200	Enhancers	Spleen	Spleen

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