Variant report

Variant	rs4936618
Chromosome Location	chr11:121223996-121223997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10750187	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10790444	0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10892742	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12275074	0.85[ASN][1000 genomes]
rs1529578	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1529579	0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs297528	0.93[ASN][1000 genomes]
rs35715037	1.00[ASN][1000 genomes]
rs4936621	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4936624	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61903105	0.80[AMR][1000 genomes]
rs6589878	1.00[ASN][1000 genomes]
rs7111793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7114702	0.87[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs4936618	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs4936618	SLC37A4	cis	parietal	SCAN
rs4936618	BACE1	cis	parietal	SCAN
rs4936618	C11orf32	Cis_1M	lymphoblastoid	RTeQTL
rs4936618	OR8B4	cis	parietal	SCAN
rs4936618	HYOU1	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121218000-121224000	Enhancers	Fetal Muscle Leg	muscle
2	chr11:121218600-121224000	Enhancers	Fetal Lung	lung
3	chr11:121219600-121225400	Weak transcription	Stomach Mucosa	stomach
4	chr11:121220400-121225200	Enhancers	Brain Germinal Matrix	brain
5	chr11:121220600-121224000	Enhancers	Brain Substantia Nigra	brain
6	chr11:121220600-121224200	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:121220800-121224000	Enhancers	Fetal Stomach	stomach
8	chr11:121221000-121224000	Enhancers	Brain Angular Gyrus	brain
9	chr11:121221200-121224000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:121221200-121224000	Enhancers	Rectal Smooth Muscle	rectum
11	chr11:121221400-121224000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:121221600-121228200	Weak transcription	Pancreas	Pancrea
13	chr11:121222000-121224600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:121222600-121224600	Enhancers	Fetal Brain Male	brain
15	chr11:121222800-121224000	Enhancers	Left Ventricle	heart
16	chr11:121222800-121224000	Enhancers	Right Atrium	heart
17	chr11:121223000-121224000	Enhancers	Lung	lung
18	chr11:121223000-121224000	Enhancers	Right Ventricle	heart
19	chr11:121223400-121224000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:121223400-121224000	Enhancers	Psoas Muscle	Psoas
21	chr11:121223400-121224200	Enhancers	Fetal Brain Female	brain
22	chr11:121223600-121224000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:121223800-121224000	Enhancers	Brain Anterior Caudate	brain
24	chr11:121223800-121224000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:121223800-121224200	Enhancers	Brain Hippocampus Middle	brain
26	chr11:121223800-121225600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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