Variant report

Variant	rs4936624
Chromosome Location	chr11:121236913-121236914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10750187	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10790444	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10790445	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12294794	0.85[CHB][hapmap]
rs1529579	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs297527	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297528	0.87[EUR][1000 genomes]
rs297529	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs297530	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936618	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4936625	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903105	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72991	0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4936624	C11orf32	Cis_1M	lymphoblastoid	RTeQTL
rs4936624	SORL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121231000-121238000	Weak transcription	Right Atrium	heart
3	chr11:121234800-121238200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:121235800-121238200	Enhancers	Fetal Brain Male	brain
5	chr11:121236000-121237200	Enhancers	Fetal Brain Female	brain
6	chr11:121236000-121239400	Enhancers	Brain Germinal Matrix	brain
7	chr11:121236400-121237000	Weak transcription	Fetal Thymus	thymus
8	chr11:121236400-121238000	Enhancers	Fetal Lung	lung
9	chr11:121236600-121237000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr11:121236600-121237800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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