Variant report

Variant	rs6589878
Chromosome Location	chr11:121223092-121223093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12275074	0.85[ASN][1000 genomes]
rs1529578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs297528	0.93[ASN][1000 genomes]
rs35715037	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936618	1.00[ASN][1000 genomes]
rs4936621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7111793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7114702	0.87[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121218000-121224000	Enhancers	Fetal Muscle Leg	muscle
2	chr11:121218600-121224000	Enhancers	Fetal Lung	lung
3	chr11:121219600-121225400	Weak transcription	Stomach Mucosa	stomach
4	chr11:121220200-121223400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:121220400-121225200	Enhancers	Brain Germinal Matrix	brain
6	chr11:121220600-121224000	Enhancers	Brain Substantia Nigra	brain
7	chr11:121220600-121224200	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:121220800-121223200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:121220800-121224000	Enhancers	Fetal Stomach	stomach
10	chr11:121221000-121224000	Enhancers	Brain Angular Gyrus	brain
11	chr11:121221200-121223600	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:121221200-121223600	Enhancers	Ovary	ovary
13	chr11:121221200-121224000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:121221200-121224000	Enhancers	Rectal Smooth Muscle	rectum
15	chr11:121221400-121224000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:121221600-121228200	Weak transcription	Pancreas	Pancrea
17	chr11:121221800-121223400	Weak transcription	Psoas Muscle	Psoas
18	chr11:121222000-121224600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:121222400-121223200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:121222400-121223600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:121222400-121223800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr11:121222600-121223800	Enhancers	Colon Smooth Muscle	Colon
23	chr11:121222600-121224600	Enhancers	Fetal Brain Male	brain
24	chr11:121222800-121223200	Enhancers	Fetal Brain Female	brain
25	chr11:121222800-121223800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:121222800-121223800	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr11:121222800-121224000	Enhancers	Left Ventricle	heart
28	chr11:121222800-121224000	Enhancers	Right Atrium	heart
29	chr11:121223000-121223600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr11:121223000-121223600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr11:121223000-121223800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:121223000-121223800	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr11:121223000-121223800	Enhancers	Stomach Smooth Muscle	stomach
34	chr11:121223000-121224000	Enhancers	Lung	lung
35	chr11:121223000-121224000	Enhancers	Right Ventricle	heart

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