Variant report

Variant	rs2982255
Chromosome Location	chrX:57615050-57615051
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12393264	0.91[YRI][hapmap]
rs12396496	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1586242	0.83[ASW][hapmap];1.00[MEX][hapmap]
rs1594508	1.00[YRI][hapmap]
rs1835693	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2982252	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2982254	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5915047	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5960975	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5960980	0.91[YRI][hapmap]
rs5961039	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753356	chrX:57526389-58283218	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv522078	chrX:57559581-57928734	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv15228	chrX:57600617-57618003	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57610400-57616400	Weak transcription	Brain Angular Gyrus	brain
2	chrX:57614000-57617200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chrX:57614000-57617200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chrX:57614000-57617200	Weak transcription	Dnd41	blood
5	chrX:57614200-57617000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chrX:57614200-57617200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chrX:57614400-57617400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chrX:57614600-57617400	Weak transcription	Primary B cells from peripheral blood	blood
9	chrX:57614800-57617400	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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