Variant report

Variant	rs5960975
Chromosome Location	chrX:57454181-57454182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10855185	0.86[YRI][hapmap]
rs1113635	0.91[YRI][hapmap]
rs1160711	0.91[YRI][hapmap]
rs12689809	0.90[YRI][hapmap]
rs1586242	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1594503	0.95[YRI][hapmap]
rs1594506	0.90[YRI][hapmap]
rs1821117	0.81[ASW][hapmap];0.95[MKK][hapmap]
rs1835693	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs1864695	0.91[YRI][hapmap]
rs1864697	0.91[YRI][hapmap]
rs2015312	0.95[YRI][hapmap]
rs2116364	0.91[YRI][hapmap]
rs2195766	0.82[YRI][hapmap]
rs2217529	0.95[YRI][hapmap]
rs2352862	0.95[YRI][hapmap]
rs2516025	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs2982252	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs2982254	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs2982255	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3015275	0.86[YRI][hapmap]
rs4030473	0.90[YRI][hapmap]
rs4129399	0.91[YRI][hapmap]
rs4607761	0.91[YRI][hapmap]
rs4826346	0.91[YRI][hapmap]
rs4826349	0.86[YRI][hapmap]
rs4826543	0.81[ASW][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs4826568	0.91[YRI][hapmap]
rs5914074	0.91[YRI][hapmap]
rs5914091	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs5914097	0.91[YRI][hapmap]
rs5914961	0.90[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs5914963	0.81[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs5914981	0.81[ASW][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap]
rs5914989	0.81[ASW][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs5914999	0.91[YRI][hapmap]
rs5915005	0.95[YRI][hapmap]
rs5915019	0.91[YRI][hapmap]
rs5915047	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs5915052	0.91[YRI][hapmap]
rs5960261	0.81[ASW][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs5960270	0.95[YRI][hapmap]
rs5960951	0.91[YRI][hapmap]
rs5960956	0.91[YRI][hapmap]
rs5960960	0.91[YRI][hapmap]
rs5960961	0.91[YRI][hapmap]
rs6612776	0.81[ASW][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs7059676	0.91[YRI][hapmap]
rs717848	0.86[YRI][hapmap]
rs7885658	0.91[YRI][hapmap]
rs980735	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57443000-57480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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