Variant report

Variant	rs3015275
Chromosome Location	chrX:57619192-57619193
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57618288..57620414-chrX:57932796..57935174,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10127436	0.96[YRI][hapmap]
rs1113635	0.95[YRI][hapmap]
rs1160711	0.86[YRI][hapmap]
rs12396496	0.95[YRI][hapmap]
rs12559310	0.82[YRI][hapmap]
rs1586242	0.86[YRI][hapmap]
rs1594503	0.91[YRI][hapmap]
rs1835693	0.91[YRI][hapmap]
rs1864695	0.92[YRI][hapmap]
rs1864697	0.92[YRI][hapmap]
rs2015312	0.91[YRI][hapmap]
rs2195766	0.84[YRI][hapmap]
rs2217529	0.88[YRI][hapmap]
rs2352862	0.83[YRI][hapmap]
rs2982252	1.00[YRI][hapmap]
rs2982254	1.00[YRI][hapmap]
rs4826349	0.91[YRI][hapmap]
rs4826568	0.92[YRI][hapmap]
rs5914097	0.95[YRI][hapmap]
rs5915019	0.92[YRI][hapmap]
rs5915047	0.91[YRI][hapmap]
rs5915052	0.95[YRI][hapmap]
rs5960270	0.87[YRI][hapmap]
rs5960975	0.86[YRI][hapmap]
rs5961026	0.88[YRI][hapmap]
rs5961039	1.00[YRI][hapmap]
rs7059676	0.91[YRI][hapmap]
rs717848	0.91[YRI][hapmap]
rs7885658	0.92[YRI][hapmap]
rs980735	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753356	chrX:57526389-58283218	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv522078	chrX:57559581-57928734	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57617400-57619600	Active TSS	Brain Cingulate Gyrus	brain
2	chrX:57617400-57619800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chrX:57617400-57620000	Active TSS	Rectal Smooth Muscle	rectum
4	chrX:57617400-57621000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chrX:57617600-57619200	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chrX:57617600-57619200	Active TSS	Fetal Muscle Trunk	muscle
7	chrX:57617600-57619200	Active TSS	Lung	lung
8	chrX:57617600-57619400	Active TSS	Osteobl	bone
9	chrX:57617600-57619600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chrX:57617600-57619600	Active TSS	Brain Hippocampus Middle	brain
11	chrX:57617600-57619600	Active TSS	Brain Substantia Nigra	brain
12	chrX:57617600-57619800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chrX:57617600-57619800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chrX:57617600-57619800	Active TSS	Colon Smooth Muscle	Colon
15	chrX:57617600-57619800	Active TSS	Fetal Intestine Small	intestine
16	chrX:57617600-57619800	Active TSS	Psoas Muscle	Psoas
17	chrX:57617600-57619800	Active TSS	Right Atrium	heart
18	chrX:57617600-57620000	Active TSS	Duodenum Mucosa	Duodenum
19	chrX:57617600-57620000	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chrX:57617600-57620000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chrX:57617600-57620000	Active TSS	Rectal Mucosa Donor 31	rectum
22	chrX:57617600-57620000	Active TSS	HMEC	breast
23	chrX:57617600-57622600	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chrX:57617600-57623200	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chrX:57617800-57619400	Active TSS	Skeletal Muscle Female	skeletal muscle
26	chrX:57617800-57619400	Active TSS	Stomach Smooth Muscle	stomach
27	chrX:57617800-57619400	Active TSS	K562	blood
28	chrX:57617800-57619400	Active TSS	NHEK	skin
29	chrX:57617800-57619600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chrX:57617800-57619600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chrX:57617800-57619600	Active TSS	Aorta	Aorta
32	chrX:57617800-57619600	Active TSS	Fetal Stomach	stomach
33	chrX:57617800-57619600	Active TSS	Left Ventricle	heart
34	chrX:57617800-57619600	Active TSS	Ovary	ovary
35	chrX:57617800-57619600	Active TSS	Skeletal Muscle Male	skeletal muscle
36	chrX:57617800-57619600	Active TSS	NHLF	lung
37	chrX:57617800-57619800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chrX:57617800-57619800	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chrX:57617800-57619800	Active TSS	Cortex derived primary cultured neurospheres	brain
40	chrX:57617800-57619800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chrX:57617800-57619800	Active TSS	Brain Inferior Temporal Lobe	brain
42	chrX:57617800-57619800	Active TSS	HSMM	muscle
43	chrX:57617800-57619800	Active TSS	HSMMtube	muscle
44	chrX:57617800-57620000	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chrX:57617800-57620000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chrX:57617800-57620000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chrX:57617800-57620000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chrX:57617800-57620000	Active TSS	Brain Angular Gyrus	brain
49	chrX:57617800-57620000	Active TSS	Colonic Mucosa	Colon
50	chrX:57617800-57620000	Active TSS	Fetal Brain Female	brain

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