Variant report

Variant	rs5961026
Chromosome Location	chrX:57677774-57677775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10127436	0.92[YRI][hapmap]
rs12396496	0.86[YRI][hapmap]
rs1594503	0.82[YRI][hapmap]
rs1835693	0.81[YRI][hapmap]
rs1864695	0.87[YRI][hapmap]
rs1864697	0.87[YRI][hapmap]
rs2217529	0.83[YRI][hapmap]
rs2982252	0.91[YRI][hapmap]
rs2982254	0.91[YRI][hapmap]
rs3015275	0.88[YRI][hapmap]
rs4826568	0.87[YRI][hapmap]
rs5915047	0.81[YRI][hapmap]
rs5915052	0.86[YRI][hapmap]
rs5961039	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753356	chrX:57526389-58283218	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv522078	chrX:57559581-57928734	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2758570	chrX:57632373-57890408	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758868	chrX:57632373-57890408	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv9947	chrX:57635783-57703304	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv930980	chrX:57672946-58544094	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57677000-57677800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chrX:57677200-57677800	Enhancers	H1 Cell Line	embryonic stem cell
3	chrX:57677200-57677800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chrX:57677400-57677800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chrX:57677400-57678000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chrX:57677400-57678400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chrX:57677400-57678400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chrX:57677600-57678400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chrX:57677600-57678400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chrX:57677600-57678400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chrX:57677600-57679000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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