Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179248693..179249390-chrX:57616388..57617183,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10127436	1.00[YRI][hapmap]
rs1113635	0.95[YRI][hapmap]
rs1160711	0.86[YRI][hapmap]
rs12396496	1.00[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs12559310	0.82[YRI][hapmap]
rs1586242	1.00[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap]
rs1594503	0.91[YRI][hapmap]
rs1594506	0.86[YRI][hapmap]
rs1835693	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs1864695	0.95[YRI][hapmap]
rs1864697	0.95[YRI][hapmap]
rs2015312	0.91[YRI][hapmap]
rs2195766	0.86[YRI][hapmap]
rs2217529	0.91[YRI][hapmap]
rs2352862	0.82[YRI][hapmap]
rs2982254	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2982255	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3015275	1.00[YRI][hapmap]
rs4826349	0.91[YRI][hapmap]
rs4826568	0.95[YRI][hapmap]
rs5914097	0.95[YRI][hapmap]
rs5915019	0.95[YRI][hapmap]
rs5915047	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs5915052	0.95[YRI][hapmap]
rs5960270	0.90[YRI][hapmap]
rs5960975	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs5961026	0.91[YRI][hapmap]
rs5961039	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7059676	0.95[YRI][hapmap]
rs717848	0.91[YRI][hapmap]
rs7885658	0.95[YRI][hapmap]
rs980735	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753356	chrX:57526389-58283218	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv522078	chrX:57559581-57928734	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv15228	chrX:57600617-57618003	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57614000-57617200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chrX:57614000-57617200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chrX:57614000-57617200	Weak transcription	Dnd41	blood
4	chrX:57614200-57617200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chrX:57614400-57617400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chrX:57614600-57617400	Weak transcription	Primary B cells from peripheral blood	blood
7	chrX:57614800-57617400	Weak transcription	GM12878-XiMat	blood
8	chrX:57616600-57617400	Weak transcription	Brain Angular Gyrus	brain
9	chrX:57616800-57617400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chrX:57616800-57617400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chrX:57616800-57617600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chrX:57616800-57617600	Enhancers	Hela-S3	cervix
13	chrX:57616800-57617800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chrX:57617000-57618000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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