Variant report

Variant	rs1864695
Chromosome Location	chrX:57511006-57511007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57509231..57511711-chrX:57522993..57525169,2	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10127436	0.96[YRI][hapmap]
rs1048358	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1073967	0.92[CEU][hapmap];0.93[JPT][hapmap]
rs10855185	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1113635	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1116848	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1160711	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs12393264	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12559310	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs12688558	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12689811	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1431677	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1469592	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1560514	0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1583200	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1586242	0.91[YRI][hapmap]
rs1594503	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1594506	0.91[YRI][hapmap]
rs1594508	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	0.92[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs1835692	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835693	0.95[YRI][hapmap]
rs1835696	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1835698	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1864697	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1997715	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2015312	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2060113	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2116364	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2116365	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2116366	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2163537	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2217529	0.96[YRI][hapmap]
rs2352862	0.87[YRI][hapmap]
rs2499555	0.92[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs2516023	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2982252	0.95[YRI][hapmap]
rs2982254	0.95[YRI][hapmap]
rs3015275	0.92[YRI][hapmap]
rs4030473	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4129399	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4319228	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4326513	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4342754	0.81[YRI][hapmap]
rs4557841	0.88[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap]
rs4587468	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4607761	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4826346	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4826349	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs4826550	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4826551	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4826568	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914084	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914095	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914097	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914100	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914107	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914118	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914961	0.91[YRI][hapmap]
rs5914962	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs5914980	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914993	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914994	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs5914999	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5915005	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs5915016	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5915027	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs5915047	0.95[YRI][hapmap]
rs5915052	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5915082	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5960270	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs5960951	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960956	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960960	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960961	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960969	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs5960970	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960975	0.91[YRI][hapmap]
rs5960980	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5961026	0.87[YRI][hapmap]
rs5961039	0.95[YRI][hapmap]
rs6611612	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6611615	0.86[CHD][hapmap]
rs6611626	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6612796	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs7059676	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs717848	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7885658	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7888674	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs957721	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs980735	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57508800-57511600	Weak transcription	Pancreas	Pancrea
2	chrX:57509800-57516600	Weak transcription	Liver	Liver

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