Variant report

Variant	rs5914107
Chromosome Location	chrX:57463031-57463032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1048358	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1073967	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs10855185	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1113635	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1116848	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1160711	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12393264	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12559310	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12687268	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12688558	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12689811	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1431677	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1469592	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1560514	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1583200	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1594503	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1594508	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	0.87[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1835692	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835696	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1835698	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1864695	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1864697	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1997715	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2015312	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2060113	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116364	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2116365	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2116366	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2163537	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2213510	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2499549	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2499550	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2499555	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2516019	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2516020	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2516023	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4030473	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4129399	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4319228	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4326513	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4557841	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs4587468	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4607761	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826346	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826349	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826550	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826551	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826568	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914074	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914084	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914095	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914097	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914100	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914118	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914962	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914980	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914993	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914994	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5914999	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs5915005	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5915016	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5915027	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5915052	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960270	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960951	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960956	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960960	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960961	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960969	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5960970	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960980	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611612	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6611626	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612796	0.81[CHB][hapmap]
rs7059676	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs717848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7885658	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs957721	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs980735	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57443000-57480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chrX:57460200-57474200	Weak transcription	Fetal Intestine Small	intestine
3	chrX:57460800-57474600	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links