Variant report

Variant	rs1560514
Chromosome Location	chrX:57386648-57386649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1048358	1.00[ASW][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs1073967	0.93[JPT][hapmap]
rs10855185	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs1113635	0.87[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs1116848	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1160711	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs12393264	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs12559310	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs12687268	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12688558	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	0.80[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs12689811	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	1.00[ASW][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs1431677	1.00[ASW][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs1469592	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1583200	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1594503	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1594508	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1835692	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1835696	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1835698	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1864695	0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1864697	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2015312	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2060113	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs2116364	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2116365	1.00[ASW][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs2116366	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2163537	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2213510	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2499549	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2499550	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2499555	1.00[ASW][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs2516019	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2516020	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2516023	1.00[ASW][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs4030473	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4129399	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4319228	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4326513	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4557841	1.00[ASW][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs4587468	0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs4607761	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826346	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs4826349	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs4826550	1.00[ASW][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs4826551	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs4826568	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs538910	1.00[ASW][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs5914074	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs5914084	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914095	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5914097	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs5914100	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5914107	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5914118	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs5914962	1.00[ASW][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs5914980	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914993	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914994	0.88[ASW][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs5914999	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs5915005	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs5915016	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5915027	0.87[ASW][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs5915052	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs5960270	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5960951	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs5960956	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs5960960	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs5960961	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960969	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5960970	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960980	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6611612	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6611615	0.80[CHD][hapmap]
rs6611626	0.87[ASW][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs6612796	0.94[CHB][hapmap];0.87[CHD][hapmap]
rs7059676	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs717848	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs7885658	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs957721	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs980735	0.88[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57375200-57393000	Weak transcription	Pancreas	Pancrea

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