Variant report

Variant	rs6612796
Chromosome Location	chrX:57413442-57413443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1048358	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs10855185	0.94[CHB][hapmap];0.87[CHD][hapmap]
rs1113635	0.81[CHB][hapmap]
rs1116848	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1160711	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs12393264	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs12559310	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs12687268	0.87[CHB][hapmap]
rs12688558	0.81[CHB][hapmap]
rs12689809	0.80[CHB][hapmap];0.90[CHD][hapmap]
rs12689811	0.86[CHB][hapmap]
rs1367830	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1431677	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1469592	0.87[CHB][hapmap]
rs1560514	0.94[CHB][hapmap];0.87[CHD][hapmap]
rs1583200	0.87[CHB][hapmap]
rs1594503	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1594508	0.81[CHB][hapmap]
rs1601317	0.81[CHB][hapmap]
rs1835692	0.81[CHB][hapmap]
rs1835696	0.85[CHB][hapmap]
rs1835698	0.81[CHB][hapmap]
rs1864695	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs1864697	0.81[CHB][hapmap]
rs2015312	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs2060113	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs2116364	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs2116365	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs2116366	0.81[CHB][hapmap]
rs2163537	0.86[CHB][hapmap]
rs2195766	0.81[CHB][hapmap]
rs2213510	0.87[CHB][hapmap]
rs2499549	0.87[CHB][hapmap]
rs2499550	0.87[CHB][hapmap]
rs2499555	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs2516019	0.87[CHB][hapmap]
rs2516020	0.87[CHB][hapmap]
rs2516023	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs4030473	0.87[CHB][hapmap]
rs4129399	0.87[CHB][hapmap]
rs4319228	0.81[CHB][hapmap]
rs4326513	0.87[CHB][hapmap]
rs4557841	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs4587468	0.86[CHB][hapmap];0.87[CHD][hapmap]
rs4607761	0.87[CHB][hapmap]
rs4826346	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs4826349	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs4826550	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs4826551	0.85[CHB][hapmap]
rs4826553	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs538910	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs5914074	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs5914084	0.87[CHB][hapmap]
rs5914085	0.87[CHB][hapmap]
rs5914095	0.81[CHB][hapmap]
rs5914097	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs5914100	0.81[CHB][hapmap]
rs5914107	0.81[CHB][hapmap]
rs5914962	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs5914980	0.87[CHB][hapmap]
rs5914993	0.87[CHB][hapmap]
rs5914994	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs5914999	0.94[CHB][hapmap];0.87[CHD][hapmap]
rs5915005	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs5915016	0.87[CHB][hapmap]
rs5915019	0.81[CHB][hapmap]
rs5915027	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs5915052	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs5960270	0.81[CHB][hapmap]
rs5960951	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs5960956	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs5960960	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs5960961	0.87[CHB][hapmap]
rs5960969	0.86[CHB][hapmap]
rs5960970	0.93[CHB][hapmap]
rs5960980	0.81[CHB][hapmap]
rs6611612	0.87[CHB][hapmap]
rs6611626	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs7059676	0.81[CHB][hapmap]
rs717848	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs7885658	0.81[CHB][hapmap]
rs957721	0.87[CHB][hapmap]
rs980735	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57390400-57419600	Weak transcription	Primary T cells from cord blood	blood
2	chrX:57390800-57421000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chrX:57392000-57423600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chrX:57405600-57426400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chrX:57407800-57422600	Weak transcription	Liver	Liver

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