Variant report

Variant	rs2516023
Chromosome Location	chrX:57313357-57313358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57020587..57023571-chrX:57312006..57315129,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204271	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1073967	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap]
rs10855185	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs1113635	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs1116848	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs1160711	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs12393264	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs12559310	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs12687268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12688558	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs12689811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs1431677	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1469592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1560514	1.00[ASW][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs1583200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1594503	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs1594508	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1835692	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1835696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835698	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1864695	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1864697	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2015312	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs2060113	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2071722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs2116364	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs2116365	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2116366	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2163537	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2213510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499555	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap]
rs2516019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs378487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs4030473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4129399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4319228	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4326513	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4557841	1.00[ASW][hapmap];0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4587468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs4607761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs4826349	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs4826550	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4826551	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs4826568	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs538910	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap]
rs5914052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs5914074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5914084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914097	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5914100	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914107	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap]
rs5914962	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5914980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914994	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5914999	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5915005	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5915016	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915027	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap]
rs5960270	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5960956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5960960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5960961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960969	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5960970	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960980	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6611612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611615	0.87[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs6611626	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap]
rs6612757	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612796	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs697664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs7059676	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs707346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs717848	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs7885658	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs957721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs980735	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57312800-57313800	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chrX:57312800-57314000	Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chrX:57312800-57314200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chrX:57312800-57314200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chrX:57312800-57314400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chrX:57312800-57314400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chrX:57312800-57314400	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chrX:57312800-57314400	Active TSS	Rectal Mucosa Donor 29	rectum
9	chrX:57312800-57314600	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chrX:57312800-57318000	Active TSS	Primary T helper cells PMA-I stimulated	--
11	chrX:57313000-57313400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chrX:57313000-57313400	Active TSS	Primary T cells from cord blood	blood
13	chrX:57313000-57313400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chrX:57313000-57313400	Active TSS	Small Intestine	intestine
15	chrX:57313000-57313600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chrX:57313000-57313600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chrX:57313000-57313600	Active TSS	Primary B cells from peripheral blood	blood
18	chrX:57313000-57313600	Active TSS	Left Ventricle	heart
19	chrX:57313000-57313600	Active TSS	Right Ventricle	heart
20	chrX:57313000-57313600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
21	chrX:57313000-57313600	Active TSS	A549	lung
22	chrX:57313000-57313600	Active TSS	NHEK	skin
23	chrX:57313000-57313800	Active TSS	H9 Cell Line	embryonic stem cell
24	chrX:57313000-57313800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chrX:57313000-57313800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chrX:57313000-57313800	Active TSS	Brain Angular Gyrus	brain
27	chrX:57313000-57313800	Active TSS	Brain Anterior Caudate	brain
28	chrX:57313000-57313800	Active TSS	Brain Hippocampus Middle	brain
29	chrX:57313000-57313800	Active TSS	Colonic Mucosa	Colon
30	chrX:57313000-57313800	Active TSS	Esophagus	oesophagus
31	chrX:57313000-57313800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chrX:57313000-57313800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
33	chrX:57313000-57313800	Active TSS	Rectal Smooth Muscle	rectum
34	chrX:57313000-57313800	Active TSS	Right Atrium	heart
35	chrX:57313000-57313800	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chrX:57313000-57313800	Active TSS	Skeletal Muscle Female	skeletal muscle
37	chrX:57313000-57313800	Active TSS	HMEC	breast
38	chrX:57313000-57314000	Active TSS	H1 Cell Line	embryonic stem cell
39	chrX:57313000-57314000	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chrX:57313000-57314000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
41	chrX:57313000-57314000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chrX:57313000-57314000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chrX:57313000-57314000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chrX:57313000-57314000	Active TSS	GM12878-XiMat	blood
45	chrX:57313000-57314200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chrX:57313000-57314200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chrX:57313000-57314200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chrX:57313000-57314200	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chrX:57313000-57314200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chrX:57313000-57314200	Active TSS	Duodenum Mucosa	Duodenum

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