Variant report

Variant	rs5914962
Chromosome Location	chrX:57336824-57336825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1048358	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1073967	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10855185	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs1113635	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap]
rs1116848	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs1160711	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs12393264	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs12559310	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs12687268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12688558	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs12689811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1431677	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap]
rs1469592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1560514	1.00[ASW][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs1583200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1594503	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs1594508	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1835692	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1835696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1835698	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1864695	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1864697	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2015312	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs2060113	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2071722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs2116364	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs2116365	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2116366	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2163537	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2213510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499555	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2516019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516023	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs378487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs4030473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4129399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4319228	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4326513	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4557841	1.00[ASW][hapmap];0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs4587468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs4607761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs4826349	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs4826550	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4826551	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs4826568	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs538910	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs5914074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5914084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914097	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5914100	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914107	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914118	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5914980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914994	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs5914999	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5915005	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5915016	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915027	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap]
rs5915052	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs5960270	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5960956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5960960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs5960961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960969	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5960970	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960980	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6611612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611615	0.87[CHD][hapmap]
rs6611626	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs6612757	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612796	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs697664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap]
rs7059676	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs707346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs717848	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs7885658	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs957721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs980735	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5914962	SPIN-2	cis	multi-tissue	Pritchard

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57316600-57339400	Weak transcription	Primary T cells from cord blood	blood
2	chrX:57319600-57337800	Weak transcription	Fetal Intestine Large	intestine
3	chrX:57321000-57337800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chrX:57322200-57339200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chrX:57322400-57338000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chrX:57322400-57341400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chrX:57323200-57337600	Weak transcription	Pancreas	Pancrea
8	chrX:57329400-57339200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chrX:57329400-57339800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chrX:57329600-57337800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chrX:57330200-57339200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chrX:57330800-57337200	Weak transcription	Liver	Liver
13	chrX:57331000-57339600	Weak transcription	Left Ventricle	heart
14	chrX:57331600-57339400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chrX:57333200-57341000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chrX:57334000-57337800	Weak transcription	Duodenum Mucosa	Duodenum
17	chrX:57334800-57337800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chrX:57336000-57337800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chrX:57336000-57338000	Weak transcription	Fetal Thymus	thymus
20	chrX:57336400-57338000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chrX:57336400-57338000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chrX:57336800-57338400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chrX:57336800-57339400	Weak transcription	Ovary	ovary
24	chrX:57336800-57339600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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